Panicum virgatum (switchgrass): 120708259
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Entry
120708259 CDS
T07260
Name
(RefSeq) LOW QUALITY PROTEIN: septin and tuftelin-interacting protein 1 homolog 1-like
KO
K13103
tuftelin-interacting protein 11
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120708259
Spliceosome [BR:
pvir03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120708259
Other components
Complex C specific factors
120708259
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GCFC
G-patch
TIP_N
G-patch_2
Motif
Other DBs
NCBI-GeneID:
120708259
NCBI-ProteinID:
XP_039849386
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Position
5K:50623995..50627295
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AA seq
673 aa
AA seq
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MDCGGERAGRARHDAINGVSAEGDSYYYDSDDDGSRRRKRRREAPEPDLSKPVRFVSTGY
AMPSHEPDPVPVNAAAKEDEAGAEAEDIEPLPTMFGKIREGARARWEEKERERDAAARRR
QAPGNPPPAPGSMQSNATVANMMRKGGYCPGMGLSKYGQGRTEPLEATVRLKNAGLGYVE
GSKKPMLAPSKENLPPATCQPASTKERQHRWLKKDSVRKTPVLTRIALLAMRERDGEEQQ
GGQPAVVQKVIDRRGPQERVLKDLRGLNDEQEMESDDAPMPELQYNVRLLVDDARICVQR
LHGQLRREREKAASLAREKEKLSKQEAAQKRQLQVMETIAGALEEVRLDDAAGALTLEGL
FMAIRDLKARFGEEFKMCCVAWIACQFAHPLLIRFFQGWQPLRDPSVGLEVMSSWKDLLE
EDXPYDSRTVLHPWRNVFDSGIWEDLIARCIVPKLKMALQEFQIKPADQKLDQFNWVMLW
ASTIPVQHMVHVLEVDFFSKWHQVIYHWLCSPNPDFNEIVSWYNDWKGRFPPELLANERI
RLLLALGLDMMNQAAEGLEVVQPGTRENLGCLRDTEKRPPDAAPNESRFPSCHGVIGPAM
TDMSFKECIQAYAMEKGLLFMPKVGKSYNGMPVYEFGTVSICLDSVKRVVYAQLGEGAER
WSLVSLRQVMEMN
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggactgcggcggcgagcgcgcgggccgggcccgccacgacgccatcaacggggtctcc
gctgagggcgactcatactactacgactccgacgacgatggttcccgccgccgcaagcgc
cgcagggaagcgcccgagcccgacctctccaagcccgtccggttcgtctccaccggctac
gccatgccctcccacgaaccagatcccgtccctgtgaacgccgcggccaaggaggacgag
gcaggggcagaggcggaggacattgagccgctccccacgatgttcgggaagatcagggag
ggcgcccgcgcgaggtgggaggagaaggaacgggagcgcgacgccgcggcgcgccggcgc
caggcgccggggaatccgccgccggctccggggagcatgcagtccaacgccactgtggcc
aatatgatgcgcaagggagggtactgtcccggcatgggcctcagcaagtacggccagggg
agaacagagccgctggaggccaccgtgcgactcaagaacgccggcctcggctacgtcgag
ggatccaagaaacccatgctcgcgccgtccaaggagaacctgccgcccgcgacttgtcag
ccggcgtcaacgaaggagcggcagcatcggtggttgaagaaggacagcgtcaggaaaact
ccggtcctgacaagaatcgcgttgttggcaatgcgcgaacgcgatggggaggagcagcag
gggggtcagccagctgttgttcagaaggtgatcgacaggcgagggccacaggagcgtgtc
ctgaaggatctgagagggctcaacgacgagcaggagatggagtcggacgacgcgccgatg
ccggagctgcagtacaacgtgcggctgcttgttgacgacgcgaggatctgcgttcagaga
ctgcacggccagctgcggcgggagcgggagaaggcggccagcttggcgcgggagaaggag
aagctgtcgaagcaggaagcggcgcagaaacggcagctgcaggtcatggagacgatcgca
ggggcgctggaggaggtccggctggacgatgcagccggcgctctcactctcgaaggattg
ttcatggcgattcgggacttgaaggcgcgcttcggggaggagttcaagatgtgctgcgtc
gcgtggatcgcctgccaattcgcgcatccgctgctcatccggttcttccagggctggcag
ccgctccgggacccgtcggttgggttggaggtcatgtcatcgtggaaggatttgctggag
gaagactaaccatacgactctcgcacggtgctgcatccatggcgaaatgtgtttgattct
ggaatttgggaagacctgattgcgcgctgtatcgttcccaaactgaagatggcactgcag
gagtttcagatcaagccagcagaccagaagctcgatcagttcaattgggtgatgctttgg
gcctcaactatcccggtgcagcacatggttcatgtgctggaagttgatttcttcagcaag
tggcatcaggtcatataccattggctgtgttcaccaaatcccgatttcaacgagatcgtt
agttggtacaatgactggaagggccgtttcccaccggagttgcttgccaacgagcgcata
cggttgcttttggcactaggcctggacatgatgaaccaagccgccgaaggactggaggtt
gtgcagcctgggactagagagaatctgggctgcttgagagatacagagaagcgaccaccc
gatgcagcaccgaacgaatcacggttcccttcttgccatggggtgataggaccagccatg
acagacatgagcttcaaggagtgtatccaggcatacgcgatggagaagggtttgttgttt
atgcctaaagttggcaagtcctacaatggcatgccagtgtatgaatttggcactgtaagt
atttgcttagattccgtgaagcgagtggtctatgcacaactaggagaaggagctgagaga
tggagccttgtatctcttaggcaagttatggaaatgaattga
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