KEGG   Panicum virgatum (switchgrass): 120708268
Entry
120708268         CDS       T07260                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1-like
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:pvir04812]
    120708268
Cytoskeleton proteins [BR:pvir04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     120708268
SSDB
Motif
Pfam: WD40 WD40_Prp19 Katanin_con80 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML Beta-prop_TEP1_C NBCH_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_DCAF4 WDR90_beta-prop_4th eIF2A Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_IP5PC_F Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 120708268
NCBI-ProteinID: XP_039849397
LinkDB
Position
5K:50737088..50743852
AA seq 832 aa
MDPEKRGYRLQEFVAHDADVRSLAIGKKSSRVFITGGNDRKVNLWAIGKQTPLLSLSGHT
SAVEVVQFDSAEMLVLAGSSNGSIKLWDLEEAKVVRSLTGHRSSCTSVEFHPFGEFFASG
SSDTDLKIWDIKKKGCIHTYKGHRGAIKRIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLH
DFKFHSGQINCIDFHPQEFLLATGSADRTVKFWDLETFELIGSAGPEGSGVHSMVFHPDG
KTLFCGLDQSLKVFSWEPVRCHDVVDMGWSNLADLSIYEGKLLGCSYHERRVGLWAADIS
LIGPYALGVLPKANFFAELVQSLDDNPVKPSDSTANSSPALAMMQPKNSYKVKEPGTAEC
WVRGSHLNPASTDKIKKDRSSTIPRRPDPSFRSSIQSSTPMRRMKLVDSPSTNPKTVEHN
FGQKDTSLTSHTRIAKNSSAKKGNLTESASVKDIYTTPQAVSAPVVVPRDILEDKTVSSV
CRGTGGTTTAPDAFRVPVHRRKPSLSGTAADSDCSVGSALSEPDVCSEGLPSLKFSGLSP
YYKKEEYGEVDKEDIAQIAEKMDRTVSLEHPLLSNDDKSFESPCSTTETARVKYVRGVAV
PLGKTKSLVERWEKRESSSNDYSPHTGSCGDRMLKNDSPPANSAEPSQTYEKDLSTVDEV
MTPVNLVQNHDEFINAVKLRLTKLEMMRHVFEQSGIKGAIAAVAKLPDNAVQADVVSALK
GKLDLFNLEIFSSFLPVLAGLLSSRTERHAAVSLEMLLDLIKIFGPVIHSTLSANLGVGV
NIQAEQRLQRCARCFNHLQKIQQVLHPLIMRGGESAQLAQELSLSLQDLVVI
NT seq 2499 nt   +upstreamnt  +downstreamnt
atggaccccgagaagcgcggctacaggctccaggagtttgtggcgcacgatgccgacgtg
aggtccctggccatcggcaagaagtctagccgtgtcttcatcaccggtggcaatgatcgc
aaggtcaacttgtgggccattggcaagcaaactccgcttctgagcttatcaggccacaca
agtgcggtggaggttgtgcagtttgattcagcagagatgcttgtgcttgctggctcatca
aatggttccatcaagctctgggacttagaggaagctaaagttgtgcgatctcttaccggg
catagatcgagttgcacttctgttgaattccatccatttggcgagttttttgcatctggt
tcatcagatacagacctgaagatatgggatataaagaaaaagggatgcattcacacatat
aagggtcacagaggagcaattaaaagaatcaggtttacccctgacgggcgatgggttgtc
accggaggggaagataacattgtgaaggtgtgggatctgacggctggaaagcttttacat
gatttcaagttccacagcggacaaattaattgcattgattttcatcctcaagaatttttg
cttgcaacaggctcagctgatcggacagtgaaattttgggacctggaaacttttgaattg
ataggttctgctggacccgagggttctggagtacattctatggtctttcatccagatggt
aaaacccttttctgtggattagaccagagcttgaaggtattctcttgggaaccagtaaga
tgccatgacgttgttgacatggggtggagtaatttggccgaccttagtatttatgaaggg
aaactattgggatgctcctaccatgaacggcgtgttggtctatgggctgctgatatatca
ctcattggaccctatgctcttggtgtgttgcccaaagcaaatttttttgctgagcttgtg
caatctttggatgataatcctgtgaagccaagtgatagcactgcaaattctagtcctgct
ttagcaatgatgcaaccgaaaaattcatacaaagtcaaggagcctgggactgctgaatgc
tgggttcgtggctcacatttgaatccagcaagtacagataagatcaagaaagataggagc
agtacaattccacgaagacctgatccatcttttagatcatctattcagagttctactcca
atgaggcgtatgaagcttgttgatagtccttccaccaacccaaaaacagtggaacataat
tttggacagaaagatacctcattaacatctcatacaagaatagctaaaaattcttctgct
aagaaaggcaatcttacagagtcagcatcggtgaaagatatttatactacaccgcaggct
gtttctgcacctgttgttgtacccagagacattttagaggacaaaacagtaagcagtgtt
tgcagaggaactggaggcacaactacagccccagatgcttttcgggttcctgttcacaga
agaaaaccttcacttagcggcactgctgctgatagtgattgctcagtaggatccgcactc
agtgaaccagatgtttgctcagagggtttgccaagcttaaagttctctggactatctcca
tattacaaaaaagaagaatatggtgaggtggataaagaagatattgcacagatagcagaa
aagatggatagaacagtgtcactggagcatcctctgctgtccaatgacgataagtccttt
gaatcaccatgctcaacaacagagacagccagggtgaaatatgttagaggagttgctgta
ccactgggaaaaacgaagtctcttgttgagaggtgggaaaagagggagtcttctagcaat
gattattcaccacatactggttcttgtggtgatcggatgttgaaaaatgacagccctcct
gccaattcagcagaaccaagtcagacatatgaaaaggatttgtcaacagtggatgaggtg
atgacgcctgtcaatttagtgcagaatcatgacgaattcataaatgctgtaaaacttcgg
ctgacaaaattggagatgatgcgacatgtctttgagcaaagtggtatcaaaggagcaatt
gctgcagtggcaaagctgcctgacaatgctgttcaagctgatgttgttagtgctctcaaa
gggaagcttgatcttttcaacctggagattttctcaagctttctgcctgttcttgctggg
ttgctgagtagcaggactgaaaggcatgctgcagtttctttggaaatgttgttggatctt
ataaagattttcggaccagttatacattcaacattatcagcaaatctaggtgtaggagtt
aacattcaggcggagcagaggttgcaacgttgcgcacgctgctttaaccatttgcaaaag
attcaacaagttctgcatccattgattatgcggggcggtgaatcagcacaactcgctcaa
gaactaagtctttcgttgcaagacttggtggtgatctaa

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