Panicum virgatum (switchgrass): 120708318
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Entry
120708318 CDS
T07260
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4-like
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120708318
09124 Replication and repair
03420 Nucleotide excision repair
120708318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120708318
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120708318
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120708318
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120708318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
120708318
NCBI-ProteinID:
XP_039849520
LinkDB
All DBs
Position
1K:complement(2355573..2359660)
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AA seq
291 aa
AA seq
DB search
MTSAHSKLYSDDVSLVVVVVDTNPFFWAAAALPFADFFANLIHFVNSLLLLNHLNRVVVI
AAGVSSCAYIFDSSDASPAGGVGVTATFENASRKVEEFIAQDARATAGNGSVASANAASL
LSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSC
IVGTHDSAFLQQASYITGGIYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFRA
SCFCHKKTIDMGYVCSVCLSIFCKNQKKCSTCGSEFSRVMPDLNSMPDQSK
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgacctccgctcactccaagctctactccgatgacgtcagcctcgtggtggtggtcgtc
gacacgaaccccttcttctgggccgccgctgcgctccccttcgccgacttcttcgcgaat
ctgatccacttcgtgaactcactcctactgctgaaccacctcaaccgtgtggtcgtcatc
gccgctggagtcagctcctgtgcctacatctttgattccagcgatgccagccccgctggt
ggtgtaggcgtcacggccacctttgaaaacgcaagccgcaaggtggaggagttcattgca
caagatgctcgtgccactgcgggcaacggttccgttgcttctgccaatgccgcgtcactg
ctgtctggggcactgtcccttgctttgtgctatatacagagggttttcaggtctgggact
cgacatccgcaacctcggattttgtgtctgcagggttctccagatggtcctgaacaatat
gtggcagtgatgaattcaatattttctgctcaacgttccatggttccaattgattcatgt
attgtgggaacccatgattctgctttcttgcaacaggcttcatacataacgggaggaatt
tatttgaagccccaagagctaaatggtttgtttcagtatcttgctgctgtatttgcaact
gatttacactcgagaacatttttgcgccttcctaagacccttggagtggactttcgtgct
tcatgtttctgccataagaagactattgacatgggatatgtttgttcagtttgtttgtca
atattctgcaagaatcagaagaagtgttcaacttgtgggtcagaattcagtcgtgtcatg
cctgatttgaattccatgccagatcaaagcaagtag
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