KEGG   Panicum virgatum (switchgrass): 120708349
Entry
120708349         CDS       T07260                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    120708349
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120708349
   03036 Chromosome and associated proteins [BR:pvir03036]
    120708349
Enzymes [BR:pvir01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     120708349
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    120708349
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     120708349
    Noncanonical PRC1 (PRC1.1)
     120708349
    Noncanonical PRC1 (PRC1.3/1.5)
     120708349
    Noncanonical PRC1 (PRC1.6)
     120708349
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-RING_6 zf-UDP zf-Nse zf-rbx1 TRAF3_RING zf-RING_11 zf-C3HC4_5 zf-RING_10 ZNF512_C2HC
Other DBs
NCBI-GeneID: 120708349
NCBI-ProteinID: XP_039849494
LinkDB
Position
5K:complement(51425962..51433527)
AA seq 481 aa
MPAQKRRLPSPSSKPRDHVAAPGSDAATTAGGGAGEGRGGRPPLPSGGAAKRRLTEPKPQ
RGLEDDSDAEDGGGADGDSDSSQSDGGGYDEFMLVKLAEIRKEVQCPICLGIIRKTRTVM
ECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEEL
AFSEQERTRNKKIQETIEETFRRQTEAIGKKRSTAKATDAAFARKYRRNMRTRGRGRTIT
PDIAPTGSDDEDREEENANEVTKEPSSADDHSPDLRQKKCRKRSASQASPARTIGSSDHS
FEENDEVVGGKEILATSPLRGEMLAWGKNGTRSQNRHSSASSNGRMGRSARIAKLVDHLR
TTDEMDKEFHLYLVLLPIDGQSIPNLEKPHLSCRPTLSIQHLVKFIAHQLSRKVEELEMY
IRMDRYNGGVGSKASSTVESKPHSFDDLERLRGDKLLSDLHPSFASSNGDLELLYALKTQ
D
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgcccgcgcagaagcgccggctcccgtcgccgtcctccaaaccccgcgaccacgtcgcg
gctcccggctctgatgccgccaccaccgccggcgggggcgcaggggaaggaaggggagga
cgcccgccgctgccgagcgggggcgccgccaagcggaggttgaccgagccaaagccgcag
cgcggactcgaagacgattcggacgcggaggatggcggcggcgcggacggcgacagcgat
tcctcgcagagcgacggcggcggctacgacgagtttatgctagtgaaattagcagagata
cggaaggaggtccagtgccctatctgtttaggaattattcggaagacaaggacagttatg
gaatgtttgcaccgattctgtagagactgcattgataaatctatgcgactaggaaataat
gaatgcccagcgtgtcgcactcattgtgcaagcagacgttctttgagggatgatcctaat
tatgatgcactgattgcagccttatatccagatattgacaagtacgaggaagaggaactt
gctttcagtgaacaggagaggactcggaataaaaagattcaagaaaccattgaggaaaca
tttcgaagacagaccgaggcaattggtaagaagcgttccacagcaaaagcaactgatgct
gcctttgcaaggaagtaccggagaaatatgcgaacacggggaagaggcagaaccataacc
cctgatattgcccctactggatctgacgatgaggatagagaagaagaaaatgccaatgag
gtcaccaaagagccatcttctgctgatgatcattctccagatttaagacaaaaaaaatgt
aggaagaggtctgcatcacaagcttcacctgctagaaccattggcagtagtgaccacagc
tttgaggagaacgatgaagtagttggtggaaaagaaattttggccacctccccattgcgg
ggagagatgcttgcatgggggaaaaatggtacacggagccagaatcgacatagcagtgct
agttcaaatggcagaatggggaggagcgcacgcattgcgaaattggttgatcacctccgt
actactgatgaaatggataaagagttccacttgtatcttgttctccttccaatcgatgga
caaagcatacctaacttggaaaagccacatctaagttgtcgaccaaccttgtccattcaa
catcttgtaaagtttattgctcatcaattgtctcggaaagtcgaggaactggagatgtac
ataaggatggaccgctacaatggtggtgttggctcaaaggcttccagtacagttgagtca
aaaccacattcatttgatgacttggaaagactgaggggagataaacttctttcggacctt
cacccttcgtttgcctctagcaacggtgatctggaattgctgtatgctttgaaaactcaa
gactag

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