Panicum virgatum (switchgrass): 120708423
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Entry
120708423 CDS
T07260
Name
(RefSeq) transcription factor GAMYB-like
KO
K09422
transcription factor MYB, plant
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120708423
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
120708423
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Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Myb_Rap1
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
120708423
NCBI-ProteinID:
XP_039849597
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Position
5K:52255768..52259616
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AA seq
552 aa
AA seq
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MYRVKSESDCEMMLQDQMDSPVADDGSSGGGSPHRGSGPPLKKGPWTSAEDAILVDYVKK
HGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTPEEERLIIQLHAKMGNKWAR
MAAHLPGRTDNEIKNYWNTRIKRCQRAGLPIYPASVCNQSSSEDQQISGDFNCGENISND
LLSGNSLYLPDFTSDNFIANTEALSYAPQLSAASISNLLGQSFASKNCSFMDQVDQSGML
KQSGCVLPALSDTVDGVLSSVDQFSKDSEKLKQALGFDYLNEANASSKTIAPFGVTLSGS
HAFLNGIFSSSRPINGPLKMELPSLQDTESDPNSWLKYTLAPAMQPTELVDPYLHSPIAT
PSAKSESASPRNSGLLEELLHEAQALRSGKNQLPSVRSSSSSAGTPCETTTVVSPEFDLC
QEYWDEHHSSFLNECAPFSGYSFTESTPVSAASPDIFQLSKISPAQSPSMGSGEQAVEPK
HDAAGSPHPENLRPDALFSGNTADPCSFNDAIAMLLGNDMNAESKPVVGDGIVFGSSSWG
NMPQACEISEFK
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgggtgaagagcgagagcgactgcgagatgatgctgcaggaccagatggactcg
ccggtggccgacgacggcagcagcggcggggggtcgcctcacaggggtagcgggccaccc
ctgaagaaagggccgtggacatccgcggaggacgccatcctggtggactacgtcaagaag
cacggcgaggggaactggaacgcggtgcagaagaacaccggcctgttccgctgcggcaag
agctgtcgcctccggtgggcgaaccacctcaggcccaacctcaagaagggggccttcacc
cccgaggaggagcgcctcatcatccagctccacgctaagatggggaacaagtgggcgagg
atggctgctcatttgccagggcgtactgacaatgaaattaagaactactggaacactcga
ataaagagatgtcaacgagctggtcttcctatctatcctgctagtgtgtgcaatcaatct
tcaagtgaagatcagcaaatttctggcgattttaactgtggcgagaatatatccaatgat
cttttgagtgggaacagtctttatctaccagattttaccagtgacaatttcattgctaat
acagaggctttatcctatgcacctcagctttcagctgcttcaataagcaatttgcttggc
cagagttttgcatcaaagaattgtagcttcatggatcaggtagaccaatcaggcatgctg
aaacaatctggctgtgtgctccctgcattgagcgatactgttgatggtgtgctttcctca
gtggatcaattttcaaaagactctgagaagctcaagcaggctttaggttttgattatctc
aatgaagccaatgctagcagcaagactattgcaccttttggggttacactttctggcagc
catgcctttttaaatggcatcttctcttcttctaggcccatcaatggtcctttgaagatg
gagctcccttcactccaagataccgaatctgatccaaatagctggctcaagtatactttg
gctcctgcaatgcagcctactgagttagttgatccttacctgcactctccaatagcgacc
ccatcagcgaaatctgagtctgcatcaccaaggaacagtggtcttctggaagagctgctt
catgaagctcaggcactaagatctgggaagaaccaactaccatctgtcagaagttcaagt
tcctctgctggtacaccatgtgagactactacggtagttagcccagagtttgatctctgc
caggagtattgggacgaacatcacagttctttcctcaatgaatgtgctcctttcagtgga
tattcgttcactgaatccactcctgttagtgccgcgtcacctgatatctttcagctctcc
aaaatttctcctgcacaaagtccttcaatgggctctggtgagcaggcagtagagcctaaa
catgatgcggcaggttcacctcatcctgaaaacctgaggccagatgcactattctctggt
aacacagctgatccatgctctttcaacgatgccatcgcaatgctactgggcaacgacatg
aatgccgagtccaaaccagttgtcggtgacggaatcgtattcggttcttcctcatggggc
aacatgccacaggcttgtgaaatttcggaattcaaatga
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