Panicum virgatum (switchgrass): 120708619
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Entry
120708619 CDS
T07260
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial-like
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120708619
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
120708619
Transfer RNA biogenesis [BR:
pvir03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
120708619
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GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
CheY-binding
Motif
Other DBs
NCBI-GeneID:
120708619
NCBI-ProteinID:
XP_039849912
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Position
5K:complement(54211656..54218636)
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AA seq
782 aa
AA seq
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MGPSPMAARAAGGCSSAALALFGFRPLRRAVRPAAAFCWGQYPPYGGCRSRLAHSLVDSV
LDELRSRRRVRVSAKIGLQGTKELSDNKIDKRALQKGLLLEFQKDSDRSLLAVVERPDGK
KNWMVTDQNGILSSIKPQQVTYVVPGVMNFDASRIDEFLEKAQDLLDPTVLECAWMELSE
NDKSITVEEFAEIVYGNKESLESYCAHFLLSRDIVYFVKVESRDYSIYQPRSPPQVEELL
RRKRAKEEAEKELEEFVHLLKSAKALPMESKPPKSSWFVDEKVGQKIEALQAYAVDACSD
EQRRLAGNILKAMGFTRTSSAALKLLINVGYFPVHVNLDLFKYDVRITYTEEVLSAAEEL
LVDRPDSDMHIRKDLSTLKVYAIDVDEADELDDALSAIRLPDGRIKVWIHVADPTCLIKP
RSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGKQCKSVSVSVTLHPDGSIAEY
TLENSVIKPTYMLTYESATELLYMNLKEEEELRILQEAASIRAQWRRSQGSIDTAMIEPR
IKVSNPDDPEPNINLYVEDQANPAMQLVSEMMILCGEAVAAFGAANNLPLPYRGHPQSNT
AVSAFSHVPDGPARSFANISVLRAAEMDFQKPVPHGVLGIPGYVQFTSPIRRYVDLLAHY
QVKAFLRGDSPPYSAGDLEGMTFIASMHVKVARRLHSNSLRYWLLEYLRRQPKGRKYKAL
ILKFVKDRMAALLLVEVGMQVTTIVSRGKVGDEVSVAVDTAHPRDDILSIREVIEDTDDT
EE
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggggccgtcgcccatggcggcgcgggcggcgggcgggtgctcatcggcggcgctcgcg
ctcttcggcttccgccccctccgccgcgccgtccgcccggccgccgctttctgctggggc
cagtaccccccttacggcggctgcaggagccgcctggcgcacagcctcgtggattccgtc
ctggatgagctccgctcccggcggcgcgtccgggtctcggcaaagataggattgcagggc
acaaaagaactgtctgacaataagatagataagagggcattacagaaagggttgctgctc
gaatttcagaaagattcagatagatctttgcttgcagttgttgaacggcctgatggaaag
aaaaactggatggtgactgatcagaatggtatcttgtcttcgataaagccccagcaggtt
acatatgtcgtccctggtgtcatgaattttgacgcttcaagaattgatgaatttcttgag
aaagcgcaagaccttttggacccaacagttttggagtgtgcttggatggagctttctgag
aatgataaatcaataacggttgaggagtttgctgagatagtatatggtaacaaggagtct
ctggaaagctactgtgcgcatttcttgttatcaagggatatagtctattttgtcaaggta
gagagcagagattattccatctaccaacctcgctcacctcctcaggtagaggaacttcta
cgacggaaacgtgctaaagaggaagctgagaaggaactggaagaatttgtccacttactc
aagtctgccaaagcattgcctatggagtccaagcctccgaaaagttcatggtttgtggat
gagaaagttgggcaaaaaattgaggctcttcaagcatatgcagttgatgcatgtagcgat
gaacaaagaagactagcaggaaatattctcaaagctatggggttcacaaggacgtcatca
gctgctctaaagctccttataaatgtcggttacttccctgtgcatgtcaaccttgatctt
ttcaagtacgatgttcgtatcacgtacaccgaggaagttttgtctgctgcggaggagctt
ctggtggacagacctgattcagacatgcatatcaggaaggatctttcaactttgaaggtg
tacgcaattgatgtagatgaggctgatgaacttgatgatgcattgagcgcaattaggctc
cctgatggtaggataaaggtctggatacatgttgctgatccaacgtgcttgatcaaacct
cggagcatcattgatagggaggcaatgcacagaggaacctcaatctttctaccaactgct
acgtttccgatgttcccggagaggcttgccatgaatgctatgagcttgcagcagggtaaa
caatgcaaatctgtaagcgtatctgtgactttgcaccctgatgggagtattgcagaatat
actctagagaattcagtcatcaaacctacctacatgttgacctacgagagtgcaactgaa
ttgctttacatgaaccttaaagaagaggaagaactaaggattcttcaagaagctgcttcc
atccgtgcacagtggcgtcgtagccagggttcaatagacactgcaatgatagaaccacgt
atcaaggtgtcaaatcctgatgatcccgaaccaaatattaatctatatgttgaagaccaa
gccaatccagcaatgcagcttgtatctgaaatgatgatactctgtggcgaggcagtggct
gcttttggtgctgccaacaatctccctttgccatacagaggtcacccccagtctaacacg
gcagtgtctgcattttctcatgtaccagatgggcctgcaaggagctttgcaaatatcagt
gtgctccgtgctgcagaaatggattttcaaaaacctgtaccacatggtgtacttggtatt
cctggctatgtgcagttcacctctcctattcgaagatatgttgatttgctagctcattac
caggtaaaagcttttcttagaggtgattccccaccatattcagcgggtgacctagaagga
atgacatttattgcgagcatgcatgttaaagtagctaggaggcttcatagcaacagctta
cggtactggttgttggaatacttgaggagacagccaaaggggaggaagtacaaagcgctg
attcttaagtttgttaaggatcgtatggcagctctgcttttggtggaggtcgggatgcaa
gttacaacaatagtttcgcgtgggaaagtgggagatgaagttagtgttgctgtggacacg
gctcatccacgtgatgatatcttatcaatcagagaggttattgaggataccgatgatact
gaggagtaa
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