Panicum virgatum (switchgrass): 120708733
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Entry
120708733 CDS
T07260
Name
(RefSeq) transcription initiation factor TFIID subunit 12-like isoform X1
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120708733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120708733
03036 Chromosome and associated proteins [BR:
pvir03036
]
120708733
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120708733
Coactivators
SAGA/TFTC/STAGA complex
120708733
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120708733
STAGA complex
120708733
TFTC complex
120708733
SAGA complex
120708733
SLIK complex
120708733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
DUF5827
LptF_LptG
Motif
Other DBs
NCBI-GeneID:
120708733
NCBI-ProteinID:
XP_039850061
LinkDB
All DBs
Position
5K:complement(55507335..55512093)
Genome browser
AA seq
512 aa
AA seq
DB search
MDAPPPSQPDAAAAAAAPSSTSTSASSAAPPPKPPASAASAAPSSDSTITTPTPTPNPGT
AANPTQTLEAPGPSAVSARPPPPRMRPPYTHLASPITMSSFSSAATTATSSSASVPPSSS
AAPPIPRGGVVMGIPAPRPAQTPAGYTGFVPPPPLAHQFGSMHRGPDQSPPSSSQFRPPS
PGIQNIGMVGSLSASQMRPGIISGPQQPRPGLPSSTTPIPSGSQMPGSQRTPSHALMRPM
SVSSPAPSPASQQTPQNSTSAFRPQQRPQVPQPRPQQSAPVTPHQQNIISAQQQQQQQQQ
QLPHNQILQQQQQKQQQQSSSHQIQQNSTPTNQPQHSQQQAARTAVAMTQKPDSPAIQNA
TVLQSVNKVATDADVSETGTRLLTKRSIHELVAQIDPNEKLDPEVEDVLMDIAEDFVESV
TTFACSLAKHRKSNTLEAKDVLLHAERSWNITLPGFSGDEIKLYKKQHINDIHRERLALI
KKSMATDTRNSAAQAAANQKNQTPKPPAPASP
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgcctccgccctcgcagccggacgccgcggcggcggcggcagcgccctcctcg
acctcaacttctgcttcctctgcggcgccaccacctaagccaccggcttccgccgcctct
gcagcgccctcttccgactccaccatcaccacccctacccccaccccgaacccaggtacg
gcagcaaaccccactcaaaccctagaggccccaggccccagcgccgtgtccgcgcggcca
ccgccgccgcgaatgaggccaccgtacacccacctagcctcgcccattacgatgtcctcg
ttctcctctgctgccacaactgcgacatcctcctccgcttccgttccgccctcttcctcc
gctgcaccccctattccaaggggaggggttgttatggggatccctgcgccgcgtcccgca
cagacgcccgctggttacactgggttcgtgccgccgcctccgcttgctcaccagtttgga
tcgatgcatcgcggccctgaccagtccccgccgtcatcttcacagtttaggccgccttcc
cctgggattcaaaatattgggatggttggatccctaagcgcatcccagatgagaccagga
ataatatctggtccgcagcagccaagacctggccttccatcttcaacaactccaatccca
tctggtagtcaaatgccaggttcacaaagaaccccctcccatgctttgatgaggccgatg
tctgtgagttctcctgctccttcccctgcttcacagcaaactccacaaaattcaacttca
gcatttaggccgcaacagaggccacaagttccacagccaagaccacaacaatctgcacct
gtgactccacatcaacagaatataatttcagcacagcagcagcagcagcagcagcagcag
caactaccacacaatcaaattttgcagcagcagcagcagaagcaacagcaacaaagttcc
tcacatcaaattcaacaaaattcaacacccacaaaccagccacagcattctcagcagcaa
gctgctcgtaccgccgtggcaatgacacagaagcctgattcgcctgctatacaaaatgct
actgttttgcaatctgtcaacaaagtcgcaactgatgcggatgttagtgaaactggtact
cgactactcaccaagagaagcatacatgaattagttgcacagattgatcctaacgaaaaa
ctggatcctgaagtcgaagatgttcttatggacattgcggaagattttgttgagtctgtc
actacatttgcctgttcattagcaaagcataggaagtcaaacaccctagaagccaaagat
gtactcctccatgcagaaagaagctggaatatcaccttgccaggcttcagtggggatgaa
atcaaactatacaagaaacagcacataaatgacattcacagggagaggcttgctctgatc
aagaagtcaatggcgactgacacaagaaattctgctgcccaagctgcagctaaccagaaa
aatcagactcctaaaccacctgccccagcttccccatga
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