Panicum virgatum (switchgrass): 120708832
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Entry
120708832 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120708832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120708832
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120708832
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
HECT type E3
120708832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
HEAT_2
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
120708832
NCBI-ProteinID:
XP_039850548
LinkDB
All DBs
Position
1K:complement(444898..455214)
Genome browser
AA seq
1841 aa
AA seq
DB search
METRSSSRKRAAAAAAASSSSSASKRSRPNTRRNSSAPVPAPVPAPAPSMEPSPSSRRRS
RAAAAAAADKGKDPDPASSDPSAPAPDDDSDAPFPQSFTSASTALQGLLRRLGAGLDDLL
PSSSSAPSSATSAHLKRILAGLQAHGDESRQLQSLMQLCEMLSIGTEDSLAAFPVDAFVP
ILVGMLGREDEPATAGASPDVMLLAARALANLVDVLPSSCSAVVHYGAIQCFCARLLTIE
YMDLAEQSLQALKKISLEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANICRKLPS
DASEFVMEAVPLLTNLLNHHDSKVLEHASVCLTRIAEAFTHYPEKLDELCNHGLVAQAAS
LISVGNSSGQASLSTSTYTGLIRLLSVCASGSLLAVKTLLLLGISGTLKDILSGSGLISG
TSVSPALTRPADQMFEIVSLADDLLPHMPARVINLPTYYHSYKSSSTKKSASIKQDGSGS
TENERSGRERLLREHPELLQQFGMDLLPTMTQVYGSSVNAPIRHKCLSIIGKLMYYSSAE
TIQSLLGTTNISSFLAGILAWKDPQVLIPALQIAEIMMEKLPETFSKLFVREGVVHAVES
LICSESSNTLPSQVPPQDKDNDSSMPSRSRRQRRRGVAVPAENSSLDESNSSSLGVACST
TSTSEVPNTSLRFAVSDHAKSFKDRYFPTDSNSSDIGVTDDLLKLRALCAKFNTAIENAK
TKAKGKSKAMSADCFDISIDVEEQLDEVISEMLAELSKVNGVSTFEFIRSGVVTALLDYL
SCGTFGKEKVSEGNLPQLRQQALRRYKSFISVALSIDHERDGTPMALLVQKLQSALSSLE
RFPVVLSQSSRIGTGGSRLTSGLGALAQPFKLRLSRAQGEKSLRDYSSNIVLIDPFASLA
AVEEFLWPRVQRSEVASKPIAPSVNNSESGVPGTTAGASLTAATAHFGLRPTTRSKSSAA
SSGTSKKDALNESTSTAKGKGKAIVKPNSDESKGPNTRNAARQKSASEKDSEMKRAHGHS
SSEDEELDTSPVEIDDALMIDDDDISEDDDDDHEVLQEGSLPMCSQDGVHDVKLGDADES
NIGSASFSQTQLSSGSIARNTSNRGPDSSEFRSASTFGSRGAMSFVAATMAGLASVGGRS
VRGTRDRRGLSLGGSMNDNNKLIFTAGGKQLSKHLTVYQAIQRQLMLDEDDEERFNGSDL
SNDGNRFWGDVFTITYQKADNQAEKGSQGGSTSLNSKSDSCRSISEAQGVSLLDSILQGE
LPCDLERTNSTYNILALLRVLEGLNQLSPRLRAQGASDDFAEGKIKTLDELYRTGAKVSS
EEFVNSKLTPKLARQMQDVLALCSGSLPSWCYQMTKACPFLFPFETRRQYFYSTAFGLSR
ALNRLQQQQSDNHSSGGEREVRFGRLQRQKVRVSRNRILDSAAKVMEMFSSQRAVLEVEY
FGEVGTGLGPTLEFYTLLSHELQSAQLGLWRSTTPYDSGLQIDMNDVINLDPEDGLSGKK
LSLDLPGDGRHLIQAPLGLFPRPWPPKADASEGSRFFKVLEYFRLIGQVTAKVLQDGRLL
DLPLSTAFYKLILGKELDLFDIVSFDSEFGKTLQELRVLVERKKFLESTPGENQLEVADL
RFRGAAIEDMCLDFTLPGYPDYVLKEGEGSAIINIYNLEEYVTLLVDATVKSGIKRQVEA
FRSGFNQVFDISSLQIFSPQELDYLICGRQEIWEPESLVDNIKFDHGYTAKSPAIVSLLE
IMAEFTPDQQHAFCQFVTGAPRLPPGGLAALSPKLTIVRKHPSSAVNTSNSTGVTESADD
DLPSVMTCANYLKLPPYSTKEIMRKKLLYAILEGRGSFDLS
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atggaaacacgcagcagcagccgcaagcgcgcagccgccgccgccgccgcctcctcctcc
tcatcagcctccaagcgctcccgccccaacacccgccgcaactcctccgcccccgtcccc
gccccggtccccgcccctgccccctcaatggaaccctccccgtcctcccgccgccgttcc
cgcgccgccgccgccgccgctgccgacaagggcaaggaccccgaccccgcctcctccgac
ccctctgcccccgcccccgacgatgactccgacgcccccttcccccagtccttcacctcc
gccagcaccgctctccagggcctcctccgcaggctcggcgccggcctcgacgacctcctg
ccctcctcctcctcggccccctcctcggccacctccgcacacctcaagaggatcctcgcc
ggcctgcaggcccacggcgacgagtcgcgccagctccagtccctcatgcagctctgcgag
atgctctccatcggcaccgaggactcgctcgccgccttccccgtcgacgccttcgtcccc
atcctcgtcggaatgcttggccgcgaggacgagcctgccaccgccggcgccagtcccgac
gtcatgctgctcgctgcccgggccctcgccaacctcgtcgacgtgctcccctcctcctgc
tctgccgtcgtgcactatggggccatacagtgtttctgcgctcgactgctaaccatcgaa
tacatggacctcgctgagcagtctctacaagctcttaagaagatctctctggagcaccca
accgcatgtttgcgagctggggcgctaatggccgtcctatcatatctcgatttcttctcc
actggggttcagagagtagcattgtctactgccgcaaatatctgcaggaagctgccgtct
gatgcttctgagtttgtcatggaagctgtccctttgctcacgaatctcctcaaccaccat
gattccaaggtactagagcatgcttctgtttgtttgacacgcattgccgaagctttcacc
cactacccagagaaacttgatgagctctgcaatcatggattggttgctcaagctgctagc
ttgatatctgttggcaactcctctggccaggcatcactgagtacatccacatatacaggc
ttaatccgtcttctctcagtatgtgctagtggatcactgctggcagttaaaacactacta
cttctgggaatcagtggcactcttaaagatatcctttctggatctggtttgatttctgga
acatcagtctcccctgctctaacaaggcctgccgatcagatgtttgagatagtgagcctt
gctgatgatttgcttccacacatgcctgcgagagtcattaatttaccaacatactaccat
tcttataaaagctcttcaacaaagaaatctgcttcgatcaaacaagatgggtctggttca
acagaaaatgaaagatccggccgtgagagactattgcgtgagcaccctgaacttctgcag
cagtttggtatggatttgttacccacgatgacacaggtgtacggttctagtgtaaatgca
ccgatacgtcacaagtgcttatctattattgggaagttaatgtactacagctctgctgaa
acaatccaatccctccttggcacaacaaacatatccagcttcctcgcaggaatacttgca
tggaaagatcctcaagtgttgattcctgctcttcagatagcagaaataatgatggaaaag
cttccggagacattttctaagttgtttgtgagggaaggtgttgttcacgctgtggagtca
cttatatgttcagaatcctccaatacattgccttctcaggtaccgccacaggataaagat
aatgattcttccatgccgtcacgttctaggcgtcaacgcaggcgtggggttgctgtgcca
gcagaaaacagttcattagatgaatcaaacagttccagtctcggggttgcctgctcaaca
acaagcacttcagaagttccaaacaccagcctgcgttttgcagttagcgatcatgcaaag
tctttcaaagatagatacttcccgacggacagtaattcaagtgatattggagttactgac
gaccttcttaaactgagagcactctgtgcaaagttcaataccgcaattgagaatgccaaa
acaaaagccaaaggtaaatcaaaagctatgagcgctgattgttttgacatctcaattgat
gtagaagaacaattagacgaagtgatatctgagatgctcgctgagcttagcaaagttaat
ggtgtttccacatttgagttcattagaagtggagttgtcacagcgttgcttgactatctg
tcctgtgggacatttgggaaggaaaaagtatctgaaggaaacctcccacagcttcgtcag
caggcccttaggcgatacaagtccttcatatctgttgccctttctattgaccatgaaagg
gatggaactcccatggcactgttggttcaaaaactacaaagtgcattgtcttcgttagaa
cgtttccccgttgtcctcagccagtctagtaggattggtactggtggctcccgtctgacc
tcaggtcttggtgctctggctcagcccttcaagttgcgtctgtcccgagctcaaggcgaa
aaatcacttcgggattattcatcaaatattgtgcttatcgacccatttgccagtctagca
gctgttgaagaattcctttggcccagggttcaacgcagtgaggttgcttcgaagcctata
gctccatctgtaaataattctgaatcaggggttcctggcaccacagctggtgcatcatta
acagctgcaacggctcatttcggtcttcgtccaacgacaagatcaaaatcttctgctgca
agtagtggtacatccaaaaaggatgctctcaatgaaagcactagtactgccaaaggaaaa
ggcaaagctattgtaaaaccaaactcagatgaatcaaaaggacctaatacgaggaatgct
gcccgccaaaagtctgcttcagagaaggattcagaaatgaagcgagcgcatggccacagt
agctctgaggatgaagagcttgatacatctcccgttgagattgatgatgctttaatgatc
gatgatgatgacatttcagaggatgacgatgatgatcatgaggttctccaagaagggtct
cttcctatgtgttctcaagatggcgtacatgacgtgaaattgggtgatgctgatgagtca
aacattggctcagccagttttagccagacgcaactgtcatctggttccattgctagaaac
acatctaacaggggaccagattcttctgaatttcgaagtgcaagcacatttggttcacga
ggtgcaatgtcatttgttgctgcaacaatggctgggctggcttctgttggtggtcgcagt
gttagaggtacccgagatcggcgtggtctgtcacttggaggtagtatgaatgataacaat
aaactcatattcactgctggtgggaagcagctcagtaaacatttgacggtgtatcaagct
atccaacgtcaactgatgcttgatgaggatgatgaagaaaggttcaatggatctgattta
tcaaacgatggaaaccgcttctggggtgatgtgttcacaataacataccagaaggctgat
aaccaagctgagaagggatcccaagggggttccacctcattaaactcaaaatcagattct
tgcaggtctatctctgaagcgcagggagtttctcttcttgatagcatcttacaaggagaa
cttccttgtgatcttgagagaacaaactcaacatacaacattttagcactattacgtgta
ctggaggggcttaatcagttatcccctcgtttaagagcacaaggtgcatctgatgatttt
gctgagggaaaaatcaaaaccctggatgagctatatagaactggagccaaggtatcctct
gaggagtttgtcaatagtaagttgacaccaaagcttgctcggcaaatgcaggatgttctt
gcactctgtagtggcagtttaccttcttggtgttatcaaatgaccaaggcctgcccattt
ctgtttccttttgagacaaggaggcagtacttctactccacagcctttgggttgtcacga
gcattgaatcgacttcagcaacagcagagtgacaatcacagctctggtggtgaaagagag
gttcggtttggcaggttacaacgccagaaagttcgtgtttcccgtaaccgtattctggat
tctgctgctaaagttatggagatgttctccagtcagagggctgttcttgaggtggaatac
tttggtgaagttggaactgggctggggcctactttggagttttatactctcttaagtcat
gagctacaaagtgctcagctggggctatggagatctactactccatatgattcaggattg
caaattgatatgaatgatgtgattaatttagaccctgaagatggcttgtcaggaaaaaaa
ctcagcttagatttaccaggtgatggcagacatttgatacaagctcctctcggattgttt
cctcggccttggccacctaaagctgatgcttcagaaggtagcagattcttcaaagttttg
gagtatttccgcttaattggtcaagtgacagcaaaagtcttgcaagatggcagactttta
gatttgcctttatcaacagcattttataagcttatacttggaaaggaacttgatttgttt
gacatagtttcatttgattctgagtttgggaagacattgcaagaactgcgagttcttgtt
gaacgaaagaagttccttgagtccactcctggtgagaatcagctagaagttgcagacttg
cgtttccgtggtgctgctattgaagatatgtgtctagattttactcttccgggctatcct
gattatgttctgaaagagggtgaaggaagcgcaattattaacatttacaacttggaagag
tatgttactttgctagtggatgctacagttaagtcagggataaagcgacaggttgaggca
tttagatcagggtttaatcaggtgtttgacatctcatccctccaaatattttcacctcaa
gaacttgactatctaatatgtggccgacaagaaatttgggagccggaatccctggtggat
aacataaaatttgatcatgggtatactgctaaaagtcctgcgattgtgagtctactcgag
ataatggcggaattcacccctgatcagcagcatgctttctgccagtttgtaactggtgct
cctcgccttccacccggtggtttggcagcccttagtcccaagcttactattgttaggaag
cacccttcaagtgcggtaaatacttcaaattcaactggggtgacagagtccgcagatgat
gatttgcctagtgtgatgacgtgtgctaattatctgaagctgcccccctactccacaaaa
gaaatcatgcgcaagaagctgctttatgcaatcctggaaggccgaggatcatttgatctt
tcataa
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