Panicum virgatum (switchgrass): 120708879
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Entry
120708879 CDS
T07260
Name
(RefSeq) F-box protein SKP2A-like
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120708879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120708879
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120708879
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GFIT
Motif
Pfam:
LRR_6
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
120708879
NCBI-ProteinID:
XP_039850237
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Position
5K:complement(56938911..56942048)
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AA seq
377 aa
AA seq
DB search
MDSVKPLSGELSNSFDTLMVSGGVEIRQAQNGGTEISLTDWKDLPMELLLRIMSIVGDDR
MVIVASGVCTGWRDALGWGVANLSLSWCRDHMNDLVISLAHKFTKLQVLSLRQIKPQLED
SSVEAVANYCHDLRELDLSRSFRLSDRSLYAVAHGCPHLTRLNISGCSNFNDAALVFLSS
QCKSLKCLNLCGCVRAASDRALQAIACNCGQLQSLNLGWCDSITDKGVTSLASGCPELRA
VDLCGCVLITDESVVALANRCPHLRSLGLYYCQNITDRAMYSLAANGRVRSQGRGWDAAR
GGGGNDWDGLASLNISQCTALTPPAVQAVCDSFPALHTCPERHSLNISGCLSLTSVHCAC
ALHPHRAGRAILSNHAY
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggatagtgtgaagccactgagcggagaattgagcaattcgttcgatactcttatggtt
tctggtggcgtcgagattaggcaggctcagaatggtggcactgaaatcagcttgacagat
tggaaagacctccccatggagctgctcctgcggattatgtcaatagtcggagatgatagg
atggtcatcgtggcctccggtgtatgcacaggatggcgcgatgcgttaggttggggagtt
gcaaatctttcactctcatggtgccgagatcacatgaatgacttagtgatatccctggct
cacaaattcacaaagctgcaagttctatctctacggcagatcaagcctcagcttgaagac
agcagtgttgaggctgtggcaaactactgtcatgatctgcgcgagctggatctcagcaga
agcttccggcttagtgaccggtccttgtacgctgtagcgcatggatgccctcacctcaca
aggctcaacatcagcgggtgctccaatttcaacgatgctgctttagtgttcctcagtagc
cagtgcaagagcctaaaatgcctgaatctgtgcgggtgtgtgagggcagcttctgacaga
gcacttcaggccatcgcctgtaactgtggccagctgcaatcgttgaacctgggctggtgc
gatagcatcaccgacaagggagtgaccagcttggcgtcagggtgccctgaactcagggct
gtggacttgtgtggttgtgttctcataacagatgagagtgtggttgcactggcgaaccgc
tgccctcacctgcggtccctggggctgtactactgccagaacatcacggaccgtgccatg
tactcgctggcagcaaacggccgcgtgaggagccagggccggggctgggacgcggcgagg
ggcggcggcggcaatgactgggatggcctggcgagcctgaacatcagccagtgcacggcg
ctgaccccgcctgctgtgcaggcggtgtgcgactcgttcccggcgctgcacacgtgcccg
gagcggcactcgctcaacatcagcggctgcctcagcctcacctccgtgcattgcgcctgc
gcgctccacccacaccgcgccgggcgagccatcctctccaaccacgcctactga
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