KEGG   Panicum virgatum (switchgrass): 120708879
Entry
120708879         CDS       T07260                                 
Name
(RefSeq) F-box protein SKP2A-like
  KO
K03875  F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120708879
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120708879
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     120708879
SSDB
Motif
Pfam: LRR_6 LRR_At5g56370 LRR_4 F-box-like F-box LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 120708879
NCBI-ProteinID: XP_039850237
LinkDB
Position
5K:complement(56938911..56942048)
AA seq 377 aa
MDSVKPLSGELSNSFDTLMVSGGVEIRQAQNGGTEISLTDWKDLPMELLLRIMSIVGDDR
MVIVASGVCTGWRDALGWGVANLSLSWCRDHMNDLVISLAHKFTKLQVLSLRQIKPQLED
SSVEAVANYCHDLRELDLSRSFRLSDRSLYAVAHGCPHLTRLNISGCSNFNDAALVFLSS
QCKSLKCLNLCGCVRAASDRALQAIACNCGQLQSLNLGWCDSITDKGVTSLASGCPELRA
VDLCGCVLITDESVVALANRCPHLRSLGLYYCQNITDRAMYSLAANGRVRSQGRGWDAAR
GGGGNDWDGLASLNISQCTALTPPAVQAVCDSFPALHTCPERHSLNISGCLSLTSVHCAC
ALHPHRAGRAILSNHAY
NT seq 1134 nt   +upstreamnt  +downstreamnt
atggatagtgtgaagccactgagcggagaattgagcaattcgttcgatactcttatggtt
tctggtggcgtcgagattaggcaggctcagaatggtggcactgaaatcagcttgacagat
tggaaagacctccccatggagctgctcctgcggattatgtcaatagtcggagatgatagg
atggtcatcgtggcctccggtgtatgcacaggatggcgcgatgcgttaggttggggagtt
gcaaatctttcactctcatggtgccgagatcacatgaatgacttagtgatatccctggct
cacaaattcacaaagctgcaagttctatctctacggcagatcaagcctcagcttgaagac
agcagtgttgaggctgtggcaaactactgtcatgatctgcgcgagctggatctcagcaga
agcttccggcttagtgaccggtccttgtacgctgtagcgcatggatgccctcacctcaca
aggctcaacatcagcgggtgctccaatttcaacgatgctgctttagtgttcctcagtagc
cagtgcaagagcctaaaatgcctgaatctgtgcgggtgtgtgagggcagcttctgacaga
gcacttcaggccatcgcctgtaactgtggccagctgcaatcgttgaacctgggctggtgc
gatagcatcaccgacaagggagtgaccagcttggcgtcagggtgccctgaactcagggct
gtggacttgtgtggttgtgttctcataacagatgagagtgtggttgcactggcgaaccgc
tgccctcacctgcggtccctggggctgtactactgccagaacatcacggaccgtgccatg
tactcgctggcagcaaacggccgcgtgaggagccagggccggggctgggacgcggcgagg
ggcggcggcggcaatgactgggatggcctggcgagcctgaacatcagccagtgcacggcg
ctgaccccgcctgctgtgcaggcggtgtgcgactcgttcccggcgctgcacacgtgcccg
gagcggcactcgctcaacatcagcggctgcctcagcctcacctccgtgcattgcgcctgc
gcgctccacccacaccgcgccgggcgagccatcctctccaaccacgcctactga

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