Panicum virgatum (switchgrass): 120708980
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Entry
120708980 CDS
T07260
Name
(RefSeq) vacuolar protein sorting-associated protein 53 A-like
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120708980
Membrane trafficking [BR:
pvir04131
]
Protein recycling
Others
EARP complex
120708980
Endosome - Golgi transport
Tethering complex
GARP complex
120708980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
COG7
Vps54_N
RINT1_TIP1
COG4_N
MUN
MPH2
LXG
HTH_Cmi2_C
Laminin_II
Motif
Other DBs
NCBI-GeneID:
120708980
NCBI-ProteinID:
XP_039850388
LinkDB
All DBs
Position
5K:complement(58334512..58343667)
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AA seq
838 aa
AA seq
DB search
MDKSSALEYINQMFPTEASLSGVEPLMQKIQSEIRRVDASILAAVRQQSNSGTKAKEELA
AATNAVQELVHKIHEIKTKAEQSESMVQEICRDIKKLDCAKRHITTTITALHRLTMLVSA
VEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDVPKITELREKFKNIKKILKSHVFSD
FSSLGTGKETEDPMLLQQLSDACLVVDALEPSVREELVKNFCSKELTSYRQIFEGAELAK
LDKTERRYAWIKRRLRSNEDTWKIFPPSWHVDYLLCIQFCKITRAQLVDILNNLKEKPDV
ATLLLAFQRTIEFEEELAEKFSGGTGTARNKESASDDEEEGGEHNKIVSDIRRKYEKKLA
APNHEAEQDKDKQKDLSVPGAGFNFHGIISSCFEPYMTVYIELEEKSLVDQLEKLVQEER
WETEEGSQTNILSSSMQVFLVIRKSLKRCSALTKNQTLFNLFQVFQRILKAYAAKLYARL
PKGGTGIVAAATGTDGQIRTSDRDERMICYIVNTAEYCHQTSGELAENVAKMINPHFADK
VDMSEVQDEFSAVITRALMTLVHGLETKFDAEMVAMTRVPWATLESVGDQSEYVNGISSI
LSSSIPMLGSLLSPTYFQYFLDKLAASLGPRFYLNIYKCKHISETGAQQMLLDTQAVKTI
LLDIPALGKQSSGAASYSKFVSREMSKAEALLKVILSPVDSVANTYRALLPEGTPLEFQR
ILDLKGLKKADQQAILEDFNKHAPAPAPAIKHPAVAPTVAPPVATASVQMAPSVASPAVS
ITPSMAALTGALANREDVLARAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNA
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggataagtccagcgctctcgagtacatcaaccagatgttccccacggaggcgtcattg
tcgggcgtcgagccgctgatgcagaagatacagagtgagattcgccgagtggacgccagc
atcctcgccgccgtacgacagcagagcaactcaggaaccaaggccaaggaagaacttgcg
gcagcaacaaatgctgttcaggaattagtgcacaagatacatgagataaaaacaaaggct
gaacaaagtgaatcaatggttcaagaaatatgccgcgacatcaaaaagttggattgtgcc
aagaggcatataacaactacaataaccgctcttcaccgtcttactatgcttgtttccgct
gttgagcaacttcaggttatggcatcaaaacgacagtataaagaagcagctgcccagctg
gaggcagtaaaccagttatgcagtcattttgaagcctatagagatgtgcccaagataaca
gagctgagagagaaattcaagaacattaagaaaatcctcaaatctcatgtattttcagat
ttctcaagcttaggaactgggaaggaaacagaagatcccatgctgttgcagcagctgtct
gatgcttgcttggtggttgatgcattggaaccatctgtaagggaagaactagtgaagaat
ttttgtagcaaggaactcacctcatataggcagatctttgaaggagcagaacttgccaag
ttagacaagactgaaaggagatatgcatggattaaacgccgactgcggtcaaatgaagat
acctggaaaatatttccaccttcctggcatgttgactatctgctgtgtatccagttctgt
aagattacaagggcccagcttgttgatatccttaataatctgaaagaaaagccagatgtt
gcaactttgttattggcgttccagagaaccattgaatttgaagaagaattggcagagaaa
ttcagtggtggaactggaactgctagaaataaagagtcagcaagtgacgatgaagaggag
ggtggggaacacaataaaattgtttcagacatacgaaggaaatacgagaaaaaactggca
gcacctaatcatgaagctgaacaagataaagacaagcagaaggatttgtcagttcctggt
gctgggtttaacttccatgggatcatatcttcttgttttgaaccatatatgactgtgtac
atagaacttgaggagaaatctttagtggatcagttagaaaaacttgtccaggaagaaaga
tgggaaacagaggaaggaagtcagacaaacattctctctagcagcatgcaggttttcttg
gtgattagaaaaagcttaaagaggtgcagtgcattaacaaagaaccaaacactattcaac
ttatttcaggtatttcaaagaatactcaaggcctatgcggctaagttatatgccaggtta
ccaaagggtggaactggtattgttgcagctgccactggtaccgatgggcagataaggacc
tcggacagggatgagagaatgatctgctacattgtcaacactgcagaatattgtcaccag
acatctggtgagctagctgagaatgttgctaagatgattaaccctcactttgctgacaag
gtggacatgtctgaagttcaggatgagttctcagctgtgatcacaagagcattaatgact
cttgtgcatgggcttgaaaccaaatttgatgctgaaatggttgcaatgactcgtgttccg
tgggctacccttgagagcgttggtgatcaatcagaatatgtgaatggtatcagctctatt
ctgtccagtagtattcctatgcttggtagcttgctttcacctacctacttccaatatttc
ctggacaaacttgcagcctctctgggtcctcggttttatctcaacatatacaagtgcaag
catatatcagaaactggtgcacagcagatgctcttggacactcaagcagttaagactatt
cttctagatatcccagctcttggaaaacagagttcaggtgcagctagctactcgaagttt
gtaagccgagaaatgagtaaagctgaagcactacttaaggttattttgtcaccggttgat
tctgttgcaaacacataccgcgccctccttcccgagggcacgcctcttgagtttcagcgg
atacttgacctcaagggcttgaagaaagcagatcagcaagccattctggaagacttcaac
aagcacgcccctgcccctgctcccgccatcaaacacccagcggtggcaccgactgtcgca
ccaccggtcgccaccgcatccgtccagatggcaccgtctgtggcaagtccagccgtttct
attacaccaagcatggctgccttgacaggagctctggcgaacagagaggacgtgctcgcc
cgagccgcggcgcttgggcggggagcagcgaccacggggttcaagaggttccttgcattg
acggaggcggccaaagatcggaaggacgggccgttccggaaactcttcaatgcgtaa
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