Panicum virgatum (switchgrass): 120708985
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Entry
120708985 CDS
T07260
Name
(RefSeq) GPI transamidase component PIG-S-like
KO
K05291
GPI-anchor transamidase subunit S
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00563
Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
120708985
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Gene cluster
GFIT
Motif
Pfam:
PIG-S
Motif
Other DBs
NCBI-GeneID:
120708985
NCBI-ProteinID:
XP_039850394
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Position
5K:58404927..58409772
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AA seq
620 aa
AA seq
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MAEIAAGEAPAPPPSAPPAPSTSGEISGGQPASNPPSTGSSNPPSRTTKPGVKRLVLTAS
VLLSFLLGLPFLLKSTEIHRSPLPSDAITALAHRLHSNPPSFPCGLHAVFLRSGSGPSDA
SLASRLERAISAQLQLLPAPSTAGNVSVSVTVESAGGCSSSSSVGSRWQCGVVTTADLVL
GDEVFDELLHSALGSGGGEGSMVYTVVVVEIDDAEEMRVVIGKHRHAWLVGKVDEAKAVS
GVGKVFVNYFMNGGIEEGETGIGKGEFMPVGSDGNVVLSFTLLNADPSGWVYDWDFEKIG
ERMLDPVIEALRPIAKINVESQVLYHTPKSSYSYADDKLGGNVLSTGDIPFFVNSNEWHL
DTSISATGRSKVLQFVVYVPSAKECPLYLQLPDGVISKTNAFISPMWGGVLIWNPPDCSP
GSRKTRGTRKKMSSQELMEALEIFIGQLRQLFGLKPSYHSQDMDMSTKFVVSEKGFTEWE
LDLLYRHHACSNLLSCLTTLESLSSLVHSLPRMIVMDEIGRQVELSLEAANLAQRNATLG
ISDSSAVSATSARALAEDAFFHPSIMSISYASIEHYFAIYMPFFAPVCLHVLLAAIKELK
RHKAERAKYSAFLASRAASS
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcggagatcgccgccggcgaggccccagcgcctcctccttctgctcctcctgctcct
tccacctctggcgaaatctccggaggccagcctgcttctaatcccccctccaccggcagc
agcaacccgccgtcgcgcacgacgaagcccggcgtgaagcgcctcgtcctcaccgcctcc
gtcctcctctccttcctcctcggactgcccttcctgctgaaatccaccgagatccaccgc
tcgccgctgccttccgacgcaatcactgccctcgcccaccgccttcactccaatccgcca
tccttcccctgcggcctccacgcggtcttcctccggtccggttccggcccctccgatgcc
tccctcgccagtcgcctcgagcgagcgatctcggcccagctccagctcctcccggcccct
tccactgccggtaatgtctcggtatctgtcaccgtcgagtcggctggtggctgctccagc
agcagtagcgttggttcgcgttggcaatgcggtgttgtgaccactgcggacctggtgctt
ggtgacgaggtgtttgatgaattgctgcactcggcactgggcagcggcggcggggaaggg
tctatggtttacactgttgtggttgtggaaattgatgatgcggaggaaatgagggttgtt
atcgggaagcatcggcatgcttggctggttggaaaggttgacgaggctaaggctgtgtca
ggtgttgggaaggtatttgtcaattatttcatgaatggtggtattgaggagggtgagaca
ggcattgggaagggcgagttcatgcctgttggatcagatggaaatgttgttctatccttt
accttgttgaatgctgatccaagtggttgggtgtacgattgggactttgaaaagattggt
gagaggatgttggatcctgtgattgaggcactgcgaccaattgcgaaaattaatgtagag
agtcaggttttgtaccacactcctaagtcgtcctattcatatgctgatgataaactcggt
ggcaatgtccttagtacgggagacattcctttctttgtaaattcaaatgagtggcacttg
gatacatcaatttcagctacaggacgatcgaaagttcttcaatttgtggtatacgttcca
tctgcaaaggaatgcccattgtacttacaacttcctgacggtgtgatttcaaaaactaat
gcatttatatcccctatgtggggaggtgttcttatctggaacccaccggactgttcacct
ggttccaggaaaactcgcggcacccggaagaaaatgtcatctcaggaacttatggaggct
cttgaaatcttcattggacaactaaggcagttgtttggtctaaaaccatcttatcactca
caagatatggacatgtcaacaaaatttgtagttagtgaaaaggggttcacagaatgggag
ttagatttactatatcgacatcatgcatgttccaatctgttgtcatgtctcaccaccttg
gagtctctatccagtctggtccattctctcccaagaatgattgtcatggatgaaattgga
agacaggttgagctttctcttgaagctgcaaatttagctcaaagaaatgcaactctagga
ataagtgactcttcagcagtatctgcaacaagtgcgagggcattagctgaggatgcattt
ttccacccatctattatgtcaatcagttatgcttcaattgagcattattttgcgatttac
atgccatttttcgcaccggtttgcctacatgtgctgctggcggcaattaaagagctgaaa
cgtcacaaggcagagcgagcaaaatattcagcatttcttgcttctcgggcggcatcctcc
tga
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