Panicum virgatum (switchgrass): 120708998
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Entry
120708998 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase RGLG5-like
KO
K16280
E3 ubiquitin-protein ligase RGLG [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120708998
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120708998
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120708998
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Copine
zf-C3HC4_3
vWA-TerF-like
zf-C3HC4
zf-C3HC4_2
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
120708998
NCBI-ProteinID:
XP_039850414
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All DBs
Position
5K:complement(58567536..58571985)
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AA seq
463 aa
AA seq
DB search
MGGSPSKSSPRDGSGHGRGYGHSRSFGQPAGPPPPQYGGYYGQDPSAAYYAAPQQGGGYA
APYPAPAYQPPAAALPPPAAKPRQLDRRYSRIADDYHSVDQVTDALAQAGLESSNLIVGI
DFTKSNEWTGKFSFHGHSLHHISSTPNPYEQAISIIGKTMSKFDEDNLIPCFGFGDASTH
DQDVFCFYPDERPCNGFSEALHRYREIVPHLRLAGPTSFAPIIEMAMTIVEQSGGQYHVL
LIIADGQVTRSVDTASGQLSSQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNI
PARAFDNFQFVNFSEIMSKNMPQSRKEAAFALSALMEIPQQYKATVELGILGRRSFKSPD
RVPLPPPAGIDDAYSYSSKSFSKPTTYPQSSSSSSQYPHYENPHSATPAAPTSTYDNQVC
PICLGNPKDMAFGCGHQTCCDCGQSLESCPICRTPITTRIKLY
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggggggaagcccatcgaagagcagcccgcgggacgggagcggccacgggcggggctac
ggccactcgcgctcctttggccagccggcggggccgccgccgcctcagtatggaggctac
tacggccaggacccgagcgcggcctactacgccgcgccgcagcaaggaggagggtacgcc
gcaccgtacccggccccggcgtaccagccccccgccgctgccctgccgccgccggccgcc
aagccgcggcagctggaccgccggtactcgcggattgccgacgattaccactcggtggat
caggttactgatgccctagctcaagctgggcttgaatcgtcgaatcttattgtcggcatt
gatttcacaaagagcaatgagtggacagggaaattctccttccatggacatagtttacat
cacattagcagcacaccaaatccttatgaacaagccatctcgatcatagggaagacaatg
tcaaaatttgatgaagacaatttgatcccatgctttggattcggagatgcgtcaacacat
gatcaagatgtcttctgtttttatcctgatgagagaccttgcaatggtttctcagaagct
ctgcatcgatatagggaaattgtaccacatttgcgcttagctggaccaacatcctttgca
ccaattattgagatggctatgaccattgtggagcaaagtggtggccaataccatgttcta
ttgataattgccgatgggcaggttacacggagtgtagatactgcatctggacagctaagt
tcgcaagagcagaagactgttgatgccattgtgaaggccagtgaactgcctttgtccatc
gtgttagtaggagttggtgatggcccctgggacatgatgaaggaatttgatgacaatatt
cctgctcgagcttttgacaatttccaatttgtgaatttctcggagataatgtccaagaac
atgccacaatcaaggaaagaggctgcatttgctctttctgcattgatggagataccacaa
cagtataaagcaaccgtggaattaggaattttaggtcgtcgctctttcaagtctcctgac
agggttcctctgccgcctcctgctggaattgatgatgcttattcctattcatctaaaagc
tttagtaagccaaccacctacccacagagttcatcatcctcatcacagtatcctcactac
gaaaatccacatagcgccaccccagctgcacctacttccacttacgacaaccaggtctgc
cctatctgccttgggaaccccaaagacatggcatttggctgtggacaccagacctgctgt
gactgtggacagagtctcgagtcgtgcccgatctgtcgcactcccatcaccacaaggata
aagctatactag
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