Panicum virgatum (switchgrass): 120708999
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Entry
120708999 CDS
T07260
Name
(RefSeq) integrator complex subunit 9 homolog isoform X1
KO
K13146
integrator complex subunit 9
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120708999
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
120708999
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Gene cluster
GFIT
Motif
Pfam:
Beta-Casp
Lactamase_B_6
Motif
Other DBs
NCBI-GeneID:
120708999
NCBI-ProteinID:
XP_039850415
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Position
5K:58595277..58601456
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AA seq
675 aa
AA seq
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MKLTCLSTSGGGGSSYHSPASHLLEMEGLRFLLDCPIDLSVLAAFSPVPHTSGEGGLIRA
VPRYWSPAAAAAAKAGGVDAVIVSSAMGMLGLPFLTRLPGFANTKIYVTEVAARIGKLMM
GELVEMHREFIRYYGPDMDGLPKWMEGEKLNELLPVFQKTVTEDEGKDLISLMPLYSPGN
IEECMQTIQPVKYGEEVCLNGIFVLKASSSGLELGNSVWTIKGPRASITYLPSSVFVSAH
ALDFDYSSLKENDVILFSDLSSLNDMDEDNEKLDEHAMDETASSLCRHSVLRDDGADADE
KILFLCNSDDITEEIERISFICSCIISAIKSGGSVLIPIGRLGVILLLLELLSETLHSSS
IKVPIFMVSETAAELIAFTNALPEWLCKSRQEKLFSGEALFGHVELLKEGKLFLFPHLHS
KGLLAAWKEPCIVFCPHWSLRLGPAVHLLRRWRADKRCLLVLEQGNDAELSLKPFMPLAI
RVLECSFLSGVRAAKIDTLLGMLKPKFVMLPEGLKSRYSAKERPWSFLYYSKGKTIELPN
FQEDFEVHLATDVALGLQPRQLNETTAVARLRTKLYVSSGQYQLAAAEKQSDQSKRHLLH
RDAVDPDHLLLALQEKGMVCSFAADDKTAGERSVLITSPGYALVKITSNRTVIYCDDERT
SKHIYDALSSICNGI
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacctgcttgtccaccagcggcggtggcggcagtagctaccactcgccggca
agccatctcctggagatggaggggctccgcttcctcctcgactgccccatcgatctctcc
gttcttgcggctttctccccggtaccccacaccagtggtgaagggggcctcatccgcgct
gtgccgcgctactggtcgccagcagcggcggctgccgcgaaagcaggcggcgtggacgcc
gtaatcgtgtcctccgcgatggggatgctgggacttcccttcctcacccggcttcccgga
ttcgcgaacaccaagatttatgtaacagaggtagcagcgaggatcggaaagctaatgatg
ggggagctggtagagatgcaccgcgaattcataaggtactatgggccagatatggatggg
ttacccaagtggatggaaggggagaaactcaatgaactcctgccagtgtttcaaaagaca
gtgactgaagacgagggaaaggatttaatttcactgatgcctctatacagtccaggaaac
atagaagaatgcatgcagacaatacagcctgttaaatatggggaggaggtttgcttgaat
ggcatatttgtgctgaaagcctctagttcaggcctggaacttggcaattctgtctggaca
ataaaaggtccaagagctagtattacctacttgccaagttcagtatttgtgtcggctcat
gcattagattttgattacagctctctgaaggaaaacgatgtgattttgttttcggatctc
tcatccttgaatgacatggatgaggataatgagaaactggatgagcatgcaatggatgaa
acagcgtcttcgttatgtcgccactcagtgttgagggatgatggtgctgatgcggatgaa
aagatcctattcctgtgcaacagtgatgacatcacagaggagattgaaagaatcagcttt
atatgctcatgtatcatcagtgcaataaaatctggaggctctgttctaataccaataggc
cgccttggtgttattcttttactcttggagcttttatcggaaactctacattcttccagc
atcaaggtacccatatttatggtttctgaaacagcagcagaactaattgcctttaccaat
gccttgcctgaatggctatgcaagtcacgccaagagaagctattctctggtgaagcatta
tttggccatgtggagcttttgaaggagggcaaattatttctgttcccccatttacactcg
aagggcctgctggcagcatggaaggagccttgtattgtgttttgtccacactggagcctt
aggcttggcccggctgtacacttgcttcgtcgctggcgtgcagacaaacggtgccttctt
gttttggagcaagggaatgatgctgagttgagtcttaagcctttcatgcccttggcaatt
cgagtccttgagtgttctttcctttctggagtaagggcagcaaaaattgatacattactg
ggaatgctcaaaccgaagtttgtaatgcttccagaaggtcttaagtcacgatattcagca
aaggagaggccatggtcattcttgtattactccaagggaaaaaccatcgagctcccaaat
tttcaggaagatttcgaggtgcacttggcaactgatgttgctttgggattgcagcctagg
caactgaatgagaccactgcagtggcaagattgagaacaaagctgtatgtaagcagtgga
cagtaccagctggctgctgcagagaagcaatcggatcaatcaaagcggcacttgctacac
cgggacgctgttgatccagatcacttgttactagcactacaagaaaaggggatggtatgt
tcgtttgctgcagacgataagactgcaggtgaacgctctgttctgattacgagtccagga
tatgctctagtgaagataacatctaataggacggttatatactgtgatgatgagagaaca
tccaagcatatttacgatgcacttagcagcatttgtaatgggatctga
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