Panicum virgatum (switchgrass): 120709002
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Entry
120709002 CDS
T07260
Name
(RefSeq) endoribonuclease Dicer homolog 3a-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120709002
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120709002
microRNA pathway
RISC loading complex
120709002
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
ResIII
PAZ
dsrm
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
120709002
NCBI-ProteinID:
XP_039850429
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All DBs
Position
5K:complement(58615157..58624521)
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AA seq
1680 aa
AA seq
DB search
MSDAEGAALGGGGDEAMGASDSAAEATVADDVGMNPLKRPFESLLQEDEAGRHKQQKREC
QDFTPRRYQLDLYEVATCQNTIAMLDTGAGKTMIAVMLIKHFGMISKTNNDRKLIIFLAP
TVQLVTQQCEVIKSYTDFEVEHYHGAKGVDQWKAHSWQEQLAKYQVVVMTPQVLLDALRQ
AFLILDMVSLMIFDECHHATGNHPYARIMKEFYHRSEHKPNVFGMTASPVIRKGVSSDLD
CENQLSELESILDSKIHAVVDREEIELCVPSAKEVNIYYGPRTVSFEDLSAELGILYCKY
DMLIAQVHCTLTNQYKDADQITKESRRRLSISLAKICYCLEDVGLLCASEATKICIERGH
KKGWLKGGGDSTDQQSDTNGSGLFANSRIHMKFFEEVLHIIDKRLQQQQGIDTLLNSESG
CVEATKRGYISPKLHELIKVFLSFSDFDNVRCLIFVDRKITARVIERTMKKIARLAYFRI
SFLTGGSSSVDALTTKEQKDTLDSFRSGKVNLLFTTDVAEEGIHVPDCSCVIRFDLPKTT
RSYVQSRGRARQKDSQYILMIEQGNVKQNDLISALMRSKTSMAEIASNREPEDSHPSFFP
TEEINEYHISTTGAKITTDSSISVLYQYCDKLPKDKYYTPRPTFQFTHYGDGYECTVTLP
SSAMFQLLVGPKARSMQKAKQLVCLDACKRLHQLGELDDHLSPSAEEPPLENLSKASICS
SGAGLGTTKRKELHGTTKVLSMSGSWASDTSVTKLQGYKLNFICDQVGQKYSDFILLIDA
NIAKEAATLDIDLYLHDKMVKASVSPCGSLELDPQQMEKAKLFQALLFNGLFGKLFTRSK
ASKTPREFILKKDDTFLWDNANMYLLLPVDPTPDSHKSVCINWNVIDVAATTVGLMRSIY
SEDQQNLIGKLNPEINGGDLIHLANKSCKVDDLRNMVVLAVHTGKMYTALDVADLCANST
FDGASDKKEAKFRTFAEYFLKKYNIFLCHPSQPLLVLKPTHNPHNLLSSKIRDEGNRVEN
KNRANSLVHMPPELLIPIDLPADVLRVFYLFPSLMYRIESLMLASQLRSEIAYTGSDISS
FLILEALTTLRCCEDFSMERLELLGDSVLKYAVSSDLFLRFPNKHEGQLSSRRQEIICNA
TLHRFGIERKIQSYIRDAAFDPRRWCAPGQLSIWPCPCECPVNSEVVTEDIHRIDDKSII
IGKACDKGHRWICSKTISDCVEALIGAYYVGGGLRAAFSVLKWLQIEIEFEKDLIVKAML
SASVRNYLPKVDVVELLEAKINYVFSVKGLLIEALTHPSQQESGATYCYQRLEFLGDAVL
DILLTQHLFLSHKDTDEGELTDLRSASVNNENFAQVAVRHNLHHFLQHSSGLLQDQITEY
VNSLEGSSMDRTNLPSSGSSRGPKVLGDIVESIAGAILIDTKFDLDVVWRVFKPLLSPIV
TPENLELPPFRELHEWCDKSGYFLGIKCENREDNIVATLNLQLKDILLVRQGRGKNKVDA
KAHAASLLLRDLEEKGLVIPKNASRTEQSEMKSGSPKHRKNLFDAMGTQNIAPPRQKDLT
MSSSGPCSVFDKALVVKVKLSKGGPRISLYESCKKLQWPMPTFEYVKVEPSVCPTSGGSS
QKAAPQGFAFASTITLHIPNGDVISLTGDGRPDKKSSQDSAALLMLYELQRRGRFQVQEV
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgcggaaggggcagcgctgggcggcggcggggacgaggcgatgggcgcctcc
gattccgcggcggaggcaaccgtcgccgacgatgtaggcatgaatcctttgaagaggcca
ttcgaatcattacttcaagaagatgaagcaggcaggcataaacagcagaagagggagtgt
caggatttcacccccagaaggtaccagcttgatctttatgaggttgcgacgtgtcaaaac
acaattgcgatgcttgacacaggggctgggaagacaatgattgctgtcatgctcatcaag
cattttgggatgattagtaaaacaaataatgaccgaaagctcatcatattccttgcgcca
acagttcaactcgtcacacagcaatgtgaggtgattaaaagctacactgattttgaggtg
gagcactatcatggtgcgaagggtgttgatcaatggaaggctcacagctggcaagagcaa
ctcgcaaaatatcaggttgtggtcatgacaccacaggtgctgctagatgctttacgccaa
gctttcttgatcttagacatggttagtctcatgatatttgatgaatgccatcatgcaact
ggtaaccacccttatgcaaggataatgaaggagttctatcacagatctgagcataagcca
aatgtgtttggtatgacagcatcacctgttataaggaaaggcgtttcttctgatttggac
tgcgaaaatcagctctctgaactggaaagtattttagattccaagatacacgctgtggtg
gatagagaagagattgaactttgcgttccttcggcaaaagaagtgaacatatactatggg
ccaagaactgtttcttttgaagatttaagtgcagaactaggaattttgtattgcaagtac
gatatgctgatagcacaagtgcattgtacactgaccaaccaatacaaagatgctgatcaa
ataacaaaggaatcacggaggcgtctctctatttccttagcaaaaatttgctattgtctt
gaagatgtcggtcttctttgtgcaagtgaggctactaaaatttgcatcgaaaggggtcac
aaaaagggttggctgaagggaggcggtgactccaccgatcagcaaagtgacacaaatgga
tcaggcttgtttgcaaattcaaggattcatatgaagttctttgaggaagtgttgcatata
attgataaacgcctccaacagcaacaaggaattgatacacttttgaactccgagagtgga
tgtgtggaagcaacaaaaaggggctatatttcaccaaagctccatgagctcatcaaagta
tttctctctttcagtgacttcgataatgtccgatgccttatttttgtggatcgaaagatt
actgccagagtcattgagcgtactatgaagaagattgcccgactcgcatatttcagaatc
tcctttctaactggtgggagttcttctgtggatgcactgaccactaaagagcaaaaagac
acactcgattcgttccgctctggaaaggtcaacttactatttactacagatgttgcagaa
gagggtatccatgtcccagactgctcgtgtgtaatacgatttgatttgccaaagactacc
cgcagctatgtgcagtcacgaggacgagcccgacagaaggactctcagtacatactaatg
attgaacagggaaatgtgaaacaaaatgacttaatatctgcccttatgagaagtaagaca
tcgatggccgagattgcttcaaaccgagagcctgaggattcacaccccagtttctttccc
actgaagaaataaatgaataccatataagcacaacaggagccaaaataactactgattcc
agcatcagtgttctctaccagtactgtgacaaacttccaaaagacaagtactacacccca
agacccacgtttcagttcacccattatggtgatggttatgagtgtacagtaacattacca
tctagcgccatgtttcagcttttagtaggtccaaaagcaagaagcatgcagaaagcaaag
cagcttgtttgccttgatgcatgtaagaggctgcatcagctgggagagcttgatgaccac
ctttctccatccgctgaagagccaccactagaaaatttgagcaaagctagtatctgctca
tccggtgcaggtttaggtacaaccaaacggaaagagctgcatggtacaaccaaggttctt
tctatgtctggctcttgggcttcagatacaagtgttactaagcttcaaggctacaagttg
aattttatttgtgatcaagttggccagaaatactctgactttatcctgctaattgatgca
aatatagcaaaagaagcagccactttggatattgatctatatttgcatgacaagatggta
aaggcttcagtttctccatgtggatctcttgagttggatcctcagcagatggaaaaagca
aaactatttcaagcacttctctttaatggtttgtttggaaaactgttcaccagatcaaaa
gcatccaaaaccccaagggagtttattctcaagaaagatgatacattcctttgggacaat
gcaaatatgtatttgcttttacctgtggatcctactccggattctcataaaagtgtgtgc
attaactggaatgtgattgatgtagcagctacaactgttggacttatgaggagcatttat
tcagaggaccaacagaacctgattggtaaacttaatcctgaaattaatggtggagatctc
attcatttggccaacaagtcatgcaaggttgatgatcttagaaatatggtagtcctagca
gttcacacagggaagatgtatactgctcttgatgtagctgatttatgtgctaatagcaca
tttgatggtgcttctgataagaaagaagcaaaatttcggacgtttgcagaatattttctg
aagaagtacaacatatttctttgtcatccgtcacagccattgctagtgttgaaacccact
cataatcctcacaaccttctttcatcaaagatcagagatgaaggcaaccgtgtggaaaac
aaaaatagggcaaatagccttgttcacatgcctccagagctgctgattcctattgattta
ccggctgatgttttgagagtattctatttgtttccgtctctgatgtatcgcattgagtca
ctaatgctagccagccaactaagaagtgaaattgcatacacaggatctgatatatcaagc
ttcctgattctggaagctcttacaacccttagatgctgtgaggacttctctatggagcgt
ttagagttactgggggactctgtacttaagtatgcagtgagttctgatctcttcctcaga
tttcctaataagcatgaggggcagttatcgtccagaaggcaagaaattatatgtaatgca
acacttcataggtttggtattgaacgtaagatacagagttacatacgtgatgctgcattc
gatcctcgtagatggtgtgcaccaggacagctgtccatctggccctgtccttgtgaatgc
ccagtaaactctgaggttgtaactgaggatattcataggattgatgacaaatctataatt
ataggcaaggcgtgtgacaagggacacagatggatatgttccaaaaccatatctgattgt
gtcgaggctttaattggagcatattatgtgggaggcggattaagagcagccttttctgtt
ctcaaatggttgcagattgagattgaatttgagaaagacctgattgtgaaagccatgttg
agtgcttctgtgcgcaattatcttccgaaagttgatgtagttgaattgcttgaagcaaaa
ataaactatgttttttcggtgaaaggtttgctgatagaggctctcacccacccatcacag
caagaatcaggagcaacatactgctaccagcgcttggagttccttggcgatgcagtcttg
gatattttacttacgcagcaccttttccttagtcataaagacaccgatgagggggagctg
acagatttacggtctgcatcagtaaataatgaaaattttgcacaggttgcagtaaggcat
aatctccaccactttctccagcattcttctgggcttctccaagaccaaatcactgaatat
gtgaatagtctggaaggttcatccatggacagaacgaaccttccatccagtggatcatct
agggggccaaaagttttaggtgatattgtagaaagtattgcaggtgcaattcttatagac
accaaatttgatttggatgtagtttggagggttttcaaacctcttctttccccaattgtc
acaccggagaatctggagttacccccattcagagaacttcatgagtggtgcgacaagagt
gggtactttttaggaattaagtgcgaaaatcgagaagacaatatagtggctactcttaat
ttacaactcaaggacattcttcttgtgaggcaaggtcgtggtaagaacaaagtagatgca
aaagcacacgcagcttccttattgctcagggatctggaggaaaaagggcttgtgattcca
aagaatgccagcagaacagaacagtctgaaatgaaatctggtagtccaaaacatcgcaag
aacttgtttgatgctatgggcacacagaatatagcaccacctaggcaaaaggacctaacc
atgtcaagttctggcccctgctctgtttttgataaagcattggttgtgaaggttaagttg
agtaaaggaggacctcgtatatcattgtacgagtcatgtaaaaagttacagtggccaatg
cctacatttgaatatgtgaaagtcgaaccaagtgtgtgccctacctccggtggttcctca
caaaaggctgcgcctcaagggtttgcattcgcttcgacaataacattgcacataccaaac
ggcgatgtcatcagccttacaggagatggacgcccggataagaagagctcacaggattct
gctgcgctgctcatgctctatgagctacagcggcgaggtagattccaagttcaagaagta
tga
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