Panicum virgatum (switchgrass): 120709012
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Entry
120709012 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120709012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120709012
03009 Ribosome biogenesis [BR:
pvir03009
]
120709012
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120709012
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
U1 related factors
120709012
Complex B
120709012
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120709012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
120709012
NCBI-ProteinID:
XP_039850446
LinkDB
All DBs
Position
5K:complement(58719614..58723780)
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AA seq
569 aa
AA seq
DB search
MNPYDTRFADPSSYHDRRSDLAVAPIVAPPVPMPAVNTYAAAYPPVPAAPAGVDYPRYGQ
GGRGRGGGGRGGGGFGGGGGGGYGGGRGARGRDGLDTLALPKPDFRSLIPFEKNFYVESP
SVQAMSDAEVAQYRRLRDITVEGREVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQ
GWPMALNGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQI
QEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIATPGRLIDLLEAGHTNLRRVT
YLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVEALARQFLQNPYKVTIG
SPDLKANHSIQQIVEVISDHEKYPRLSKLLSDLMDGSRILIFFQTKKDCDKITRQLRMDG
WPALSIHGDKAQAERDYVLAEFKSGKSSIMAATDVAARGLDVKDIKCVINYDFPTTLEDY
IHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKILREAGQVVNPALESMSKSASLMGGGN
FRSRGRGGFGNRGHMSGSNSFPLGGRRPY
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgacacccgcttcgccgacccctcgtcgtaccacgacaggcgcagcgac
ctggccgtggctcctattgtcgctccgccggtccccatgccggcggtgaacacttacgcc
gccgcgtatccgcccgtgccggcggcacccgctggcgtcgattacccgcgctacgggcag
ggcggcagaggccgtggaggaggaggcagaggcggaggcggctttggaggtggcggtgga
ggcggctatggtggcggcagaggggcgcgcggcagggacgggcttgacacgctcgccctg
cccaagcctgacttccggagcctgataccgttcgagaagaacttctacgtggagtctccc
tccgtgcaggctatgtcggatgcggaggtggcgcagtaccgccgcctacgggatatcacc
gtcgagggccgggaggtgcccaagccggtccgatacttccaggaagccaacttcccagat
tactgcatgcaagcaattgccaaatctgggtttgtggagccgacacctattcaatctcaa
ggttggcctatggctctgaatggtagggacctgattggtatcgctcaaacaggctcaggg
aaaacattatcttatctgctacctgggttggttcatgttggcgcccagcctcggctagag
caaggtgatggcccaattgtattaatcctcgccccgacaagagaacttgctgttcaaata
caagaagaatccacaaaatttggatcatattcaagaactagaagcacatgtgtctatggt
ggtgcacctaagggtccacaaatacgtgaccttagaagaggagtggaaattgtcatcgca
actcctgggaggttgattgatttgctggaagctggtcacacaaacctacgtagagtgaca
taccttgtgctggacgaggcagaccggatgttagatatggggtttgagcctcaaattcga
aaaattgttgcacagatccggccagacaggcaaaccttatattggagtgccacttggcct
agagaagttgaagccttagctagacagtttctgcaaaatccttacaaggtaaccatagga
tcacctgaccttaaagctaatcattccatacaacaaattgttgaagttatttcagatcat
gagaagtacccgagactcagtaagctcttgtctgatttaatggatgggagccgtatcttg
atatttttccaaacgaaaaaggactgtgataagatcaccaggcaacttagaatggatggg
tggccagcattatctatacatggtgataaagctcaagctgaaagggactatgttcttgca
gagtttaagagtggcaagagttcaataatggctgccacagatgtagcagcacgtggtctt
gatgtgaaggacataaaatgtgtgataaattatgatttcccaacaactcttgaagattat
attcacaggataggccgaactggccgtgctggtgccagcggaacagcatttacttttttc
acacatgcaaatgcgaagttctcaaggaatcttgtcaagattttgcgggaagctggccaa
gtcgtgaatcctgcactagaatccatgtccaaatctgcaagtttgatgggaggaggcaat
ttccgatcgaggggaagaggtgggtttggtaaccggggtcatatgtctggatcaaattcc
tttccgttaggaggaaggaggccatactaa
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