Panicum virgatum (switchgrass): 120709044
Help
Entry
120709044 CDS
T07260
Name
(RefSeq) AP-4 complex subunit epsilon-like
KO
K12400
AP-4 complex subunit epsilon-1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120709044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120709044
Membrane trafficking [BR:
pvir04131
]
Endosome - Golgi transport
Others
AP-4 complex
120709044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
HEAT_2
Cnd1
HEAT
INTS1_R4
HEAT_EZ
PDS5
Motif
Other DBs
NCBI-GeneID:
120709044
NCBI-ProteinID:
XP_039850490
LinkDB
All DBs
Position
5K:complement(58925916..58932776)
Genome browser
AA seq
970 aa
AA seq
DB search
MEQLRTIGRELAMGSQGGWGQSKEFLDLVKSIGEARSKAEEDRIIARELEHLKRRLADPD
VPRRKMKELLLRLVYAEMLGHDASFGHIHAVKMTHDESLPLKRTGYLAVALFLDERHDLV
ILVVNTIQKDLRSDNYLVVCAALTAACRLIGEEAIPAVLPQVVELLAHPKEAVRKKAVMA
LHRFYQRSPSSISHLVSNFRKRLCDNDPGVMGATLCPLYDLILEEPNSYKDLVVSFVNIL
KQVAERRLPTSYDYHQMPAPFIQIKLLKILAVLGSGDKQASGHMYTVLGDIFRKGDTASN
IGNAILYECICCISSIFPNPKMLEAAAETTSKFLKSDSHNLKYMGIDSLGRLIKINPDIA
EEHQLAVIDCLEDPDDTLKRKTFELLYKMTKSTNVEVIVDRMIEYMINITDHHYKTEIAS
RCVELAEQFAPSNLWFIQTMNKVFEHAGDLVNIRVAHNLMRLIAEGFGEEDEGADSQLRS
SAVDSYLRIVGEPKLPSSFLQIICWVLGEYGTADGKYSASYIIGKLCDVAEAHLTDDTIK
AYAISAILKIFAFEIALGRKIDMLPECQTLVDELSASHSTDLQQRAYELQALLGLDKRAV
ESVMPADASCEDIEVDRNLSFLNSYVQQALENGAAPYIPESERSGVISVGSYRSQEQQET
SAHTLRFEAYEMPKPSLTLATSQVSMSTPPTDLVPIPDPGYYKEDHQTSRSQPSGDAISG
EFGVKLCLDGVQKKWGRPTYSSSTPSSSASSQQATNGGSHSDGGGSTSSQARESSYGSKR
QQGTEISAEKQRLAASLFGSAAAKADRKAQASRKASKESASAEKATASSAAPQPIKEQVI
PAAPAPDLLDLGDEPVSSAPPSADPFSQLEGLLGPASATPVVSGALATSTSKAPDLLSIF
SDDVPTGATSGSTDPALGDVNLMSSHKGATAAAAKKGPSLQDALQKDATARQVGVTPTGN
NPNLFKDLLG
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggagcagctgcggacaatcgggcgggagctggcgatggggtcgcagggcgggtggggg
cagtctaaggagttcctcgacctcgtcaagtccatcggcgaggcgcgctccaaggcggag
gaggaccgcatcatcgctcgcgagctcgagcacctcaagcgccgcctcgccgatcccgac
gtgccccgccgcaagatgaaggagctcctcctccgcctcgtctacgccgagatgctcggc
cacgacgcctccttcggtcacatccacgccgtcaagatgacccacgacgagtcactcccg
ctcaagcggaccgggtacctcgccgtcgcgctcttcctcgacgagcggcacgacctcgtc
atccttgtggtcaacaccatccagaaggacctcaggtccgacaactacctcgttgtctgc
gcagcactcaccgctgcgtgccgcctcattggcgaggaggccatccctgccgtgctgcca
caagttgtagagctgcttgcgcaccctaaggaggccgtgaggaagaaggccgtcatggcg
ctgcaccgattctaccagcgatccccctcatctatttcccaccttgtctccaacttccgc
aagaggctctgtgacaacgatcctggtgtgatgggtgcaactctgtgccccctctatgac
ctgatcttggaggaaccaaattcatacaaggacttggttgttagttttgttaacatcctc
aaacaagttgcagagaggaggcttccgacttcctatgattatcaccaaatgcctgcaccg
tttattcagataaaactattgaagatacttgctgtgctgggtagcggtgataaacaagca
agtggacatatgtacacagtattgggtgatatattcaggaagggtgacactgcaagcaat
attggaaatgctatactgtatgaatgcatatgctgtatttcatccattttcccaaaccct
aagatgctagaggctgcagctgaaacgacatcaaagtttctgaagagtgatagccataat
cttaagtacatgggtattgattctcttggccggctaataaaaataaatccagatattgcg
gaagagcaccaattggccgttattgattgtttagaggaccctgatgacactttgaagcgc
aagacttttgagcttctttataagatgacaaagtcaacaaatgttgaagtgattgttgat
agaatgattgagtacatgatcaacataactgatcatcattacaagacggaaattgcatca
cgttgtgttgaacttgcagagcaatttgcacctagcaatctgtggttcatccagactatg
aataaagtcttcgagcatgctggagatcttgtcaacataagagtggcacacaatttgatg
cggcttattgctgaaggctttggcgaggaggatgaaggtgcagacagtcaactaagatca
tcagctgtagattcctatctccgcattgtgggagagccaaagcttccttcttcttttctg
cagataatatgctgggttttgggtgaatatggaacggcagatgggaagtattcagcttct
tatatcattggaaagttgtgtgatgttgcagaggcccatctcacagatgacactatcaag
gcgtatgcaatctcggcaattttgaagatatttgcatttgaaattgctcttggaaggaag
attgatatgctgcctgagtgtcaaacattggtagatgaattgtcagcttcacattcaaca
gatttgcagcaacgggcatatgaactacaggctttactaggcttggacaaacgtgctgtt
gaaagtgttatgcccgcagatgcaagctgtgaagatattgaggtcgacagaaacctctca
tttctaaatagttatgtgcagcaagccttggaaaatggtgctgccccttacattccggag
agcgaacgctcaggtgtgataagtgttggcagctacagaagccaagaacaacaggaaaca
tctgcccatactcttagatttgaggcctatgagatgcctaaaccttcattgacactagca
acctcacaagtcagcatgtccacaccacctactgacctggttccaattccagatcctggt
tactataaggaagaccaccaaacatcaaggtcccagccttcaggtgatgcgatttctggt
gagtttggtgtcaaactttgccttgatggggttcaaaagaaatggggaaggccaacctat
tcctcttctacaccttcaagctcagcatctagccaacaagcaaccaacgggggctctcat
tctgatgggggaggctcaaccagttctcaggcgcgggagtcctcctatggttcaaagaga
cagcagggcacggaaatttcagcagaaaaacaacggcttgctgcttcactttttggttca
gcagctgctaaagctgataggaaagcacaagcttctcgaaaggcatcgaaggagagtgct
tcagcggagaaagcaactgcgagtagtgcggcaccccaacccattaaagagcaagtaatc
cctgctgccccagcacctgatctgctggatctgggtgacgagccagtctcatcagctcct
ccgtcagctgaccctttctcacagctagaggggcttcttggaccagcatcagccactccg
gtggtttctggagctctggctaccagcacttccaaagcaccagatcttttgtcgatcttc
tcagatgatgtaccaactggagcgaccagtggatccactgatcccgctctaggtgatgtt
aatttgatgagctcccacaaaggagcaactgcagcggctgcaaagaagggtcctagcctt
caagatgccttacaaaaggatgcgactgcacgacaagtaggtgtgacaccaacagggaac
aatcccaatcttttcaaggacttgctaggctag
DBGET
integrated database retrieval system
