Panicum virgatum (switchgrass): 120709046
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Entry
120709046 CDS
T07260
Name
(RefSeq) E3 ubiquitin ligase PQT3-like
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120709046
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120709046
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
U-box type E3
120709046
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
120709046
NCBI-ProteinID:
XP_039850492
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All DBs
Position
5K:complement(58955602..58959630)
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AA seq
675 aa
AA seq
DB search
MGVVYYQYKSEKEICSMPVPYTFISVSELKQLIMTSGKYGRGRTRGRPMDDIAISNAQTG
EEYADERAMVLQNTHVLVRRINIPGQLSEKIVLSPARKVTEGCSVPSSESVVTDLGSKSC
ASIGVQDEDAAITAVIDAAELKLEQYPAKRGQGSGRFASGRNYGGEVETPPLGYVCRSCG
VPGHFIQHCPQESKTPPAGYICYRCRIPGHFIHHCPTIGDPKFDNNKMSRSLAPVVTVSP
VNGILEALVPAAPVSAVDDLPAELHCRLCKKVMIDAVLTSKCCFDSFCDKCIRDYIITES
KCICGVKALADDLIPNQTLRSTINNMLGTRASTGGSGTTTHRSSSGSNPVPRLQNHTPSA
ASERVMKQSTDLELSAASALDDGLQVATTGDLMNQPQEKLAANVDIASKDKGNSTEVSTE
RTVAGSEVIEVKDGSGSTLKVTTVSGVLEHIATRTDQPKKKRKKVDSTKNVQPNNVDHGY
NVPFDPAYYNPFISGYSWVTEPYMYGSMGMPYGGYPMVPYGVNYFNGMPPQAPGMPGYPA
SYQRPETQPTHHWGTEAVASHSRQAERPKDTRVHPQSSENNCQLGSHGSESRNRTRSSSE
RRDHGRPNRSSDDYHEDQSSRKRMRDSSPMYGDKHSGRRSRHSSRSMTREEDASDDECNF
KRRWGRRSVGVDTRH
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttgtgtactaccaatataagagtgaaaaggagatctgttccatgcctgtgccc
tatacttttatatctgtctctgaactcaagcagcttatcatgacgagcggtaagtacggc
cgtggacgaacccgcggccgtcccatggacgatattgccatctccaacgcccagactggc
gaagaatatgcagatgaaagggcaatggtactacagaacacacatgtgctggtccgaaga
attaacattcctggacaactgtcagagaaaatcgtcttatccccagcgcggaaagtcaca
gaaggatgttctgtaccttcaagcgagtcagtggttactgatttaggctcaaaatcgtgt
gcctccataggcgtgcaggatgaagatgctgcaatcacggcggtgattgatgcggctgaa
ctcaaattggaacagtacccagctaaaaggggacagggtagtggaaggtttgcatcagga
agaaactatggaggggaagtggagacacctccactagggtacgtctgccgctcttgcggt
gttccaggccatttcattcaacactgtccacaggaaagcaagacacctcccgctggatac
atctgctacagatgccgaatcccagggcatttcattcaccattgccccaccattggggat
cctaagttcgataataataaaatgagtcggtcccttgcgccagtagtaactgtaagtcct
gtcaatggcattctggaagcacttgtcccggctgcaccagttagtgctgttgatgacttg
ccagcagagctccactgtcgactgtgtaaaaaagtgatgatagatgcagtattgacaagc
aagtgctgttttgacagtttttgtgataaatgtattcgggattacattattacagagtcg
aagtgcatttgtggagtcaaggcgctagcagatgacctcattcccaatcaaacacttcgg
agcacaatcaacaatatgttgggaacaagagctagcactggtggaagtggcacaacaacg
cacagaagttcatcaggcagcaaccctgttcccagattacagaaccacaccccttctgct
gcctcagaaagggtgatgaagcaatcgacagaccttgagctgtcagcagcatctgcactt
gatgatggactccaggttgccacaaccggtgatctaatgaatcaacctcaagagaaattg
gcagccaatgttgatatcgcgagcaaagacaaaggcaattccacagaagtgtcaacagag
aggactgtagcaggttctgaggtaattgaagtaaaagatggaagtggatcaacattaaag
gtcactactgtttcaggggtcctagagcacattgccacaaggacagatcaaccgaagaag
aagcggaagaaggtagactcaacaaagaatgttcaacctaacaatgttgaccatggttac
aatgttccatttgacccagcatattacaaccctttcatcagtgggtattcttgggtaact
gaaccttacatgtatggctcaatgggaatgccttacggtggttatccaatggtcccatat
ggtgtaaattacttcaacggcatgccaccacaggctcctggaatgccaggctatccagca
agctatcagaggcctgaaactcagcccacacatcactggggcacagaagctgttgcgtca
cattcaaggcaggctgagaggcccaaggacactcgtgttcacccccaatcttcagagaac
aactgccaactgggttctcatggttcagaatcgaggaacagaaccaggtcaagctctgag
agaagggaccatgggcgtcctaacaggtcctcagatgactaccacgaggatcagtcaagt
aggaagagaatgcgtgattcttctccaatgtatggcgacaaacacagcggccggaggtcg
agacacagttccaggagtatgactcgtgaggaggatgcaagcgatgatgagtgcaacttc
aagaggaggtgggggcgcagatcagttggagtggatacaaggcactga
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