Panicum virgatum (switchgrass): 120709066
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Entry
120709066 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase RNF4-like
KO
K22651
E3 ubiquitin-protein ligase RNF4 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120709066
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120709066
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120709066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-rbx1
zf-RING_4
Zn_ribbon_6
Prok-RING_4
RING_XB3-XBAT31
zf-RING_10
Sina_RING
zf-RING_11
zf-Nse
zf-RING_6
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
120709066
NCBI-ProteinID:
XP_039850515
LinkDB
All DBs
Position
5K:59121408..59124340
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AA seq
248 aa
AA seq
DB search
MNSPGAGRRIPKRRRTAKLLSQPFVSRPFDLNCPPAEGAGEGGSTLSIMPVSHTQASSSM
PVSHSQASSSMPPATNEPHVGMHSCPIDVEAIDDDVVIHSSRSLPQARQQSTRTERITVI
IDDDSETNPEPAGDALDEHVNTLLSLGINRRYQPLRATSTCPVISLVDTPEVNFFKAPPE
PVKEVPKEPKFTCPICMNELTEATSTVCGHIFCQKCIKAAIQAQKKCPTCRKSLNKNQHH
RVYLPTTE
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgaactcccccggtgctggaaggcggattccgaagaggcgacggacggctaagttgctt
tcacagccttttgtttcacggccttttgacctgaactgcccccctgctgaaggggctggt
gaggggggttcaactttgagcattatgcctgtctcacacacccaagcttcaagcagtatg
cctgtctcacacagccaggcttccagtagcatgccacctgctactaatgagccacatgtt
ggcatgcatagttgccccattgatgtggaagccattgatgatgatgttgttatccattct
tcaagatcactccctcaggcaagacaacagtcgaccaggacggaacgtattactgtgata
atagatgatgattctgaaacgaacccagaaccagcaggggatgctcttgatgagcatgtg
aacacactgctatccctgggcataaaccgcaggtatcagcctctaagagcaactagcact
tgccctgtaataagtttagtggacacaccagaagtcaacttcttcaaggcaccccctgaa
cctgtgaaggaggttccgaaggaaccaaagttcacctgccctatatgcatgaatgagctg
acagaagcaacatccactgtctgcggtcacattttctgccagaagtgcatcaaggctgcc
attcaagctcagaagaagtgccctacctgccgaaagagccttaataaaaaccagcaccac
cgggtatacctcccgacaacggagtaa
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integrated database retrieval system
