Panicum virgatum (switchgrass): 120709113
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Entry
120709113 CDS
T07260
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1-like isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120709113
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120709113
Surveillance factors
Other surveillance factors
120709113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
120709113
NCBI-ProteinID:
XP_039850573
LinkDB
All DBs
Position
5K:complement(59707577..59714516)
Genome browser
AA seq
1535 aa
AA seq
DB search
MAERKLDRPAALGKDALSLGIEEDRAAAAAMGFVDDSKDQLHLDNSIPLSPQWLYTKPAD
GKISLPHGSSFEPAEREVRMLEGTIDRKERRRNVFDADNSLRWLEEERETSLLGRRERKK
EVERDVDNRKIDRRSDNVSARDNTDSRAPPPSERWNDGSTRMGNEGRRDGKWSTRWGPDD
KEKDSRSEKKVDTEKDETHAEKQTFTGRLLSESDSRDKWRPRHRQESHSVGTATYRAAPG
FGSEKGRVKDSNVGFAPGRGRGNPNSVTSFSRPSSAGPIGAPAVHGRSAKSAVSFRYPRG
KLLDIYRQKNMMSSFDDAKPEEIPSITLSTSAKPLAFVAPDTVEEALLEDIRKGKVISSE
GSNATGNKKERAKELEEPSSGIDEDKDKVDVASGGLVQEGSATLISEKDAFYDNRMLSGG
VAPPKKSMEQNAGSNQYKIAGIQDGLKTDEAKSSTDLDLSTKLPDDANTLFDVPPFEHHS
EPPIPYQNSDIDIKAGGHASYPEELTLYYLDPQGGVQGPFLGADIISWYEDGYFGLELPV
RLSQAPDDVPFRPLVEVMPHLGQKPQSHPPAVCDESAESLDSAQSKFEAAIPTSASSGKS
VQASKWDSESNAVDPKRGDHDASLPSRTGWLSSHETGKDTANISSCQQNIPESVTQDAEE
VLYTGRPNSSMGQSVRDLENDRADFQLAPRDPHSAVGEANLQQHDIPRECDLSPLGLLWS
ELEGMHPKQPLSSNVLGVNERRNPKPTAPKDIPPVNMRHGQLSRMNEASSMRDEWPANFG
RLDSMNDANISGRIPQVEAEHHLNFEEQLLLQQIRREQLQQEQMMVRNSLEFPGPFPGQV
FDSLHQHRQPVNQPLSDVEHLLRVQFELDQQQQRRQQLQQEQHQRQLQQQRQAQLLQQQQ
QQQQQQQQMILEQLLQQQLQGSNFGPTNMVDQVLLREHVLNELHQQPHHLQRQHDAAIEQ
LIQAKFGHGLHREHHNDMLDVLSRPNQRQMLPLEQQILLGLQQEQLQSQQLANALRQHSG
REEERHLSGVWPMDDAAQFIRPGTSPNQGHASRHGRFDLLENIQRSSSFEQHEPLDRNLS
LHERLHRGGQGIHSLERSGSFPGGGPVPNPDVINALARHHGLGQLETHGDLYSLGQMPML
PSGVHPQQHRLQEQLSGSHLGRLERHWSDANGQMQNSLMESSRINQLQIEAEKQRRNVEM
NLSVDNPHAWAALMNKERNTEQDLSDMIHSKLVLQSQQSLGFPDVPVPASFGRKDHFAQP
VAENPLRSPVDRLSFEESLAERSLFAKTGQSAQEGSADLDSLPNSIENSGKYNIRSSSGS
MLEQKHFLGIDDLQSDFSDVTGGRASANHLVGSVNELTRGKKQGSSVNLVADDTNFSEDA
VNNWSDTGVSKGSSHSLLKRSTNQHTATSQAVSTDLSAIRLKKAGLMSSVENKMESGVTS
VAQAMEASVPSNKETGVYSVPSATNNPDASGPSFSEALKSKKPPLQYDTLESADGGPGGK
GAKKKTKKGKQIDPSLLGFKVHSNRIMMGEIVRDD
NT seq
4608 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaggaagctggatcgaccggccgcgctcgggaaagatgcgttgtcgcttggg
atcgaggaggacagggccgccgctgccgccatggggttcgtcgacgattccaaagatcag
ctgcacctggataacagcattcctctgtctcctcagtggctctacaccaagccggctgat
ggaaagatttcactgcctcatgggtcctcctttgaacctgctgaaagggaagtgaggatg
ttggaaggaactattgataggaaagaaagaaggcggaatgtatttgatgctgacaatagt
cttcgttggcttgaagaggagagggaaacaagcttgcttgggaggagggagcgcaagaag
gaagtggagcgggatgttgataatcgtaaaattgatcgacgatctgacaatgtttctgca
agggataacactgattcacgtgcacctcctccatctgaaaggtggaatgatggttccacc
cgcatggggaatgagggtcgccgtgatggaaaatggtcaacaagatggggacctgatgac
aaggagaaggactctaggtcagaaaagaaagttgacacagaaaaggatgaaacacatgct
gaaaagcagacattcacaggaaggctgctgtctgagtctgattcccgtgataaatggagg
cctcgtcaccggcaggaaagtcattctgttgggacggcaacataccgcgctgctccaggc
tttggatcggagaaagggcgtgtaaaggactcaaatgttggctttgcccctgggcgaggc
aggggaaacccaaactcagtcacatccttcagccggccatcatctgcaggaccaattggt
gccccggctgtgcacgggaggtctgcaaaatctgctgttagcttccgctacccaagaggg
aagcttctggatatttacaggcaaaaaaatatgatgtcatcctttgatgatgctaaaccg
gaagaaattccttccatcacactctctacttctgcaaaaccgcttgcctttgttgcaccg
gatactgttgaagaggctcttctggaagatattagaaagggtaaagtcattagcagcgag
ggaagcaatgcaactggaaacaaaaaagagagggcaaaagagcttgaagaaccctcttct
ggcattgatgaagacaaagacaaggtcgatgtagcatctggtggtttggttcaggaagga
tctgcaactttaatctcggagaaggatgccttctatgacaaccggatgctgtctggtggt
gttgctccaccaaagaaatctatggaacaaaatgctggcagtaatcaatacaagattgct
ggcattcaggatggtttgaaaactgatgaagccaagtcaagtactgatcttgatcttagc
actaaactacctgatgatgcaaacacactgtttgatgtgccaccttttgagcatcactca
gaaccccctatcccgtaccaaaatagtgacattgatataaaagcaggtggccatgctagt
tacccagaggagttgacattgtattatctggatccccaaggaggcgtgcagggtccattt
ctgggtgctgacataatctcctggtatgaagatggatactttggtttggagttacctgtg
cgtttgtctcaggctccagatgatgttcctttccgcccacttgttgaagtcatgccacat
cttggacagaagccgcagtctcatccacctgcagtctgtgatgaaagtgctgaatctttg
gattctgcccaaagtaaatttgaagctgcaatccctacttctgcttcttccgggaaaagt
gtccaagcctccaaatgggattctgaaagcaatgcagttgatcctaaaagaggtgatcat
gacgcatcattaccttcgcgtactggttggttatcttcacatgaaacaggaaaggataca
gcaaatattagtagttgccagcagaacattcctgaatcagtgactcaggatgctgaagaa
gtgctgtacactgggaggcctaatagcagcatgggtcaatctgtacgggatcttgaaaat
gaccgtgcagatttccagttggcaccacgtgatcctcattctgctgtgggcgaagctaat
ttgcagcagcatgatattccaagagagtgtgatctcagtcctcttggcttactttggtct
gagctggaagggatgcatccaaagcaacctctctcatcaaatgtacttggcgtaaatgag
cgtagaaatcccaagcctacagcgcccaaggatattccacctgtaaacatgagacatggg
caacttagcaggatgaatgaagcttctagtatgcgtgatgaatggcctgcaaactttggg
cggctggatagtatgaacgacgcaaatatttcaggcagaatccctcaggttgaggctgag
catcatttgaattttgaggagcaactgctgcttcaacagatccgaagggagcaactgcag
caggagcaaatgatggtccgtaacagcttggagtttcctggtccatttccaggccaagtg
tttgattctttgcaccaacaccggcagcctgtgaatcaaccactttctgatgtggagcat
cttttgagagtccagtttgaacttgaccagcagcagcaacgtcgccaacagctccaacag
gagcagcaccaaaggcagctgcagcaacaacggcaagcccagcttttgcagcagcagcaa
cagcagcagcagcagcagcaacagatgattcttgagcaactgttgcagcaacagttgcag
ggttcaaattttggaccaacgaatatggttgatcaagtcttacttcgggagcatgtatta
aatgaactgcatcaacaacctcaccatttacaaaggcagcatgatgcggcgattgaacaa
ctaattcaagcaaaatttggccatggccttcatagggagcatcataatgatatgttggat
gttctctcacgtccaaaccagagacagatgcttcctttggagcagcaaattcttttaggc
cttcagcaggagcagcttcagtcacaacagctggctaatgctctgcggcaacattcaggc
agggaggaagaaaggcacttaagtggggtctggccaatggatgatgcagcacagtttatc
cgcccaggaaccagtccaaatcaaggtcatgcatctcggcatggtcgtttcgatctccta
gagaacattcagagatcttcgtcgtttgagcagcatgaacctctggaccggaacttgtcc
ttgcacgagcgattgcataggggaggccaaggtattcactcactcgaacggtcaggttct
tttcctggtggtggtcctgtaccaaatccagatgttataaatgccctagcacgccatcat
ggacttggtcagttggaaacacatggtgatttatattctttaggacaaatgcctatgctt
ccttcaggggttcacccccagcaacataggcttcaagagcagctttctggttcacactta
ggaaggctggaaaggcactggtcagatgccaatggacaaatgcaaaatagtctaatggaa
tcttcacgtatcaaccagttgcagattgaagcagagaagcagaggaggaatgtggaaatg
aacctttctgttgacaacccacatgcatgggcagcacttatgaacaaagagaggaacacg
gagcaagatttgagtgatatgattcacagcaaacttgtccttcagtcacaacaatctttg
ggcttccctgatgttccagtgccggcatcgtttgggcgtaaagatcactttgcacaacct
gttgcggaaaaccctttgagatccccagtggacaggttatcttttgaggagtctcttgca
gaaaggtcactttttgcaaaaacaggtcagtcagcgcaggagggatcagccgaccttgat
agtttacccaacagtattgagaacagtggaaaatacaacattagatcaagctctggatca
atgcttgagcagaagcattttcttggaattgatgatcttcaaagcgacttttcagatgtc
acaggtggcagagcgtcagctaatcatttggttgggagtgtcaatgagttgaccaggggg
aaaaagcagggttcaagtgtgaacttggttgcggacgatactaacttttctgaagatgct
gttaacaactggtctgatactggtgtatcaaaagggagctctcactccttattaaaacgc
tccacaaaccaacatacagctacatcccaggctgtttctacggatctatcagcaatcagg
ctgaagaaggcaggccttatgtcctctgttgagaataagatggaatcaggtgtcacatcg
gtagcccaggctatggaagcctctgttcctagcaacaaagagacaggggtgtatagcgtg
ccatcagccacaaacaatccagatgcctctggtccttcattcagtgaagcgctgaagtca
aagaaacctccgttgcagtatgataccttggaatctgctgacggtggcccaggtggtaaa
ggtgcgaagaagaaaacaaagaaaggaaagcagatcgacccttctcttcttggcttcaag
gtccacagtaaccggatcatgatgggcgagattgttcgagatgattag
DBGET
integrated database retrieval system
