Panicum virgatum (switchgrass): 120709152
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Entry
120709152 CDS
T07260
Name
(RefSeq) long chain base biosynthesis protein 2d-like isoform X1
KO
K00654
serine palmitoyltransferase [EC:
2.3.1.50
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00600
Sphingolipid metabolism
pvir01100
Metabolic pathways
Module
pvir_M00094
Ceramide biosynthesis
pvir_M00099
Sphingosine biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
120709152
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120709152
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.50 serine C-palmitoyltransferase
120709152
Amino acid related enzymes [BR:
pvir01007
]
Aminotransferase (transaminase)
Class II
120709152
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Aminotran_1_2
Beta_elim_lyase
Aminotran_5
DegT_DnrJ_EryC1
SHMT
Motif
Other DBs
NCBI-GeneID:
120709152
NCBI-ProteinID:
XP_039850626
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All DBs
Position
5K:complement(60013475..60021996)
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AA seq
489 aa
AA seq
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MVRLPYVTALTTLFSYGLLFAFGQLRDFFRRILDARKPSNLKGYAPICLGLEDFYTRRLY
LRIQDCFGRPIASAPDAWFDVVERYSNDCNKTLHRTAKTSKCLNLGSYNYLGFAAADEYC
TPRVIESLKKYSASTCSVRVDGGNTKLHTELEELVARFVGKPAAVLFGMGYVTNSAIIPA
LIGKGGLIISDSLNHNSIVNGARGSGATVRVFQHNNPAHLEEVLREQIAGGQPRTHRAWK
KIIVIVEGIYSMEGELCKLPEVISVCKKYKAYTYLDEAHSIGAVGKTGRGVCELLGVDPA
DVDIMMGTFTKSFGSCGGYIAASKEIIHHLKHTCPAHIYATSMSPPAVQQVISAIKVILG
EDGTNRGAKKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLR
QNVAVVTVAFPATPLLLARARICISASHSREDLIKGLEVISKVGDLVGIKYFPVEQEKTA
VVEKQKKIQ
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggtgcggctcccgtacgtgaccgcgctcaccacgctcttcagctacggcctcctcttc
gccttcggccagctgcgcgacttcttccgcaggatcctcgacgcccgcaagcccagcaac
ctcaagggttacgcgccgatatgcttgggcctcgaggatttctacacgcgccgtctctat
ctccgcatccaggactgctttggccggccaattgcaagtgcgccagatgcttggtttgat
gtggttgagcgttactcaaatgactgcaacaagacactacatcgaaccgcaaaaacatcc
aaatgccttaatttgggttcctacaactaccttggttttgctgcggctgatgagtactgc
acccctcgtgttattgagtcactgaagaagtactctgcaagcacgtgcagtgttcgagtt
gatggaggtaacactaagttgcacactgagcttgaagaactggttgcgagatttgttggc
aagcctgcagcagttctttttggcatgggctatgtgacaaattctgctatcattcctgct
ctaattgggaagggaggcctgataataagtgattcattgaaccataattctatagtcaat
ggagctaggggttcaggggccaccgttcgtgtttttcaacataacaatcctgctcatttg
gaagaggtattgagagagcagattgcgggagggcagcctcgtacacacagagcatggaag
aagatcattgtgattgttgagggaatttatagcatggagggggagctatgcaaactccca
gaggttatttctgtatgcaagaaatacaaggcttacacatatttagacgaggcacacagt
attggagcagttgggaaaacagggagaggtgtatgcgagctactgggagtggatccagct
gatgttgacattatgatgggtacatttacgaaatcatttggatcatgcggaggttacatc
gcagcatcaaaggagattattcatcatctaaagcatacatgcccagctcacatttatgca
acatcaatgtcacctccagcggtccagcaagtcatttcagctataaaggttatcttggga
gaagatggaactaacagaggggccaagaaacttgctcagattcgagagaacagcaatttc
tttcggtcagagcttcagaaaatgggttttgaggttcttggggataatgactcacccgtc
atgcctatcatgctttacaatcctgctaaaattcctgcattttcaagggagtgcctgagg
caaaatgttgctgttgttactgttgcatttcctgccactccacttctacttgcaagagct
aggatatgtatctcagcttcccactccagggaagatctcattaaaggattagaggtgatc
agcaaagttggtgatctcgtgggtatcaaatacttcccggttgagcaagaaaagactgca
gttgttgagaaacagaagaagatccaatga
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