Panicum virgatum (switchgrass): 120709227
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Entry
120709227 CDS
T07260
Name
(RefSeq) crossover junction endonuclease MUS81-like isoform X1
KO
K08991
crossover junction endonuclease MUS81 [EC:3.1.22.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120709227
03460 Fanconi anemia pathway
120709227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120709227
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120709227
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GFIT
Motif
Pfam:
ERCC4
EME1-MUS81_C
HHH_8
Motif
Other DBs
NCBI-GeneID:
120709227
NCBI-ProteinID:
XP_039850712
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Position
5K:60754820..60758964
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AA seq
453 aa
AA seq
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MAPPAPMQLKVRLPENEEVARALHEKRLAMREQPSGFKEHLDRTFGKAYHNVCAATEPIR
TLKDFSKIKGVGPWLIRCMKGFFAESSQDLSPAKRNVAGENGKKPRGPKRCVPKKKTAAS
GSPGKEAPANLNCQIALSLPPCQGTLDLQSAGKMDSAEFNVLDKNSVLTDHSILAMPPHQ
SNEEFLEAYEVVLILDDRENFGSRSRKVASRKVADNICSQFNVSVEVKRLPVGDGIWIAR
HRKFLTEYVLDFIVERKNVADLGSSIRDNRYKDQKSRLQNCGLRKLIYLVEGDPNTANGS
VASIKTACFTTELFEGFDVLRTTGYTDTQRTYGYLTQSIIDYYSTNFCSLAKSDRICPTY
DEFEGNCRSLQKKTVSQIFALQLMQVPQVTEKVALAVIEFYPTLLSLARAYSMLEGDICS
QEEMLKNKSKVINAGASRNIFKLVWGDGCNLQA
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcctgcgccgatgcagctcaaggtgcgcctcccggagaacgaggaggtcgcg
cgcgccctccacgagaagcggctggcgatgagggagcagccgagcggtttcaaggagcac
ctcgaccgcacgttcggcaaagcctaccacaatgtctgcgctgccacggagcccatccgg
accctcaaagacttctccaagatcaaaggtgtgggaccatggctcatacgttgtatgaaa
ggattctttgcagagtctagccaggatttatctcctgctaaacgtaatgtagcaggagag
aatgggaagaaaccaagggggccaaagcgttgtgtgccaaagaagaaaactgctgcttct
ggttctcctggaaaggaggctcctgccaacttaaactgtcagattgctctgtctcttcct
ccatgccaaggaacacttgatctgcaatcagctggtaaaatggattctgctgaatttaat
gtgctagacaagaactccgtattaacggaccactctatactagctatgccacctcatcaa
tcaaacgaggagtttcttgaagcttatgaagttgttttgatactagatgatcgtgagaat
ttcgggtctcgttcgagaaaagttgcatcaagaaaagttgctgataacatatgttcacag
tttaatgtatctgtagaggttaagcgtttgcctgtaggtgatggcatttggattgctcgt
cataggaaatttcttacagagtatgttctggatttcattgttgaaaggaaaaatgttgca
gatttaggtagctcaattagagacaacagatacaaagatcagaaatcacggctgcagaat
tgcgggctaaggaagctcatatatcttgttgaaggcgatccaaacactgcaaacggatca
gtggcaagcattaaaacagcctgtttcaccactgagcttttcgaaggatttgatgttctg
cggaccactgggtacactgatacccagagaacatatggctatcttacacaatcaataatt
gactactacagcacaaatttctgcagtcttgctaaaagtgatcgtatttgcccaacctat
gatgagtttgagggaaactgccgtagccttcagaagaaaacagtgagccaaatatttgct
ctgcaacttatgcaggtgccacaagtaacagagaaagttgcgttggctgttatagagttc
tatccaactcttttatctctcgcaagggcatactctatgcttgaaggtgacatctgttcc
caagaggagatgctgaagaacaagagcaaggtgataaacgcgggggctagcagaaacatc
ttcaagcttgtctggggtgatggatgtaatcttcaggcatag
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