Panicum virgatum (switchgrass): 120709316
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Entry
120709316 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase RGLG3-like isoform X1
KO
K16280
E3 ubiquitin-protein ligase RGLG [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120709316
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120709316
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120709316
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Copine
zf-C3HC4_3
vWA-TerF-like
Sina_RING
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
DUF2957
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
120709316
NCBI-ProteinID:
XP_039850851
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Position
5K:complement(61601294..61605945)
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AA seq
387 aa
AA seq
DB search
MWGERTHHKHWHQGHGPSGSSKDKKHDKRQPKFIPDNYSSVDEVTTALREAGLESSNLIL
GIDFTKSNEWSGRHSFGRKSLHAINGNPNPYEQAISIIGRTLSPFDDDNLIPCFGFGDAS
THDHSVFSFYQDSRPCRGFEEVLVRYRQIVPHLNLSGPTSFAPLIYAAISVVENSNWQYH
VLVIIADGQVTTANTNDGRLSPQEQATIKAIVDASHYPLSIVMVGVGDGPWDAMQHFDDC
IPDRTFDNFQFVNFTDIMSTSKDMSKKEAAFALAALMEIPSQYKATQGIRYEEKQAQRIG
SPRILPPPNKVIEHYNAAASHPPPTASSRSTGIGKNAADEQVCPICLTNPKDMAFQCGHL
TCKECGPTLSTCPLCCASITMRVRLYS
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgtggggtgagagaactcatcacaagcactggcatcaagggcatggtccatccggaagt
tccaaggacaaaaaacatgacaaacggcagcccaaatttatacctgacaattatagctcg
gtggatgaggtcactactgcactgagagaagctggtctcgaatcatcaaatctaattctt
ggtattgacttcaccaaaagcaatgaatggtcaggtaggcattcctttggaagaaaatct
ctacatgccattaacggcaacccaaatccatacgagcaagctatctctataattgggcga
acactgtcaccttttgatgatgataacttaataccatgttttggatttggcgatgcttct
acgcatgatcactccgtcttcagcttctaccaggatagtcgtccctgtcgtggcttcgag
gaggttcttgtaaggtatcgacaaattgttccacatttgaatctttcaggaccaacttct
tttgcacctctgatttatgcagcgatttctgttgttgaaaatagtaattggcaataccat
gtcctcgtaatcatagctgatggacaggtgactactgctaatacaaatgatggaagatta
agtccacaagaacaggcaaccataaaagcaattgttgatgctagtcactatcctctttca
atagtaatggttggggtgggtgatggaccgtgggatgcaatgcagcattttgatgactgt
atccctgacagaacttttgacaatttccagtttgtgaacttcactgatattatgtcaaca
agtaaggacatgtcaaagaaggaggctgcatttgcccttgcagctcttatggaaatacct
tctcagtataaagcaactcaaggcatccgatatgaagaaaagcaagcacaaaggattggc
tctcctaggattcttcctcctccaaataaagttattgaacattataatgcagcagcttca
catcctcctccaactgcaagctcccggtcaactggcattggcaaaaatgctgctgatgag
caggtatgccccatctgtttaaccaatccaaaggacatggcttttcagtgtggtcacctg
acatgtaaggaatgtggtccaaccctatcgacatgcccattgtgctgtgcttcgattacc
atgcgtgtgaggctctactcttaa
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