Panicum virgatum (switchgrass): 120709485
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Entry
120709485 CDS
T07260
Name
(RefSeq) LEC14B protein-like isoform X1
KO
K11801
DDB1- and CUL4-associated factor 11
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120709485
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120709485
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Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_EIPR1
PROPPIN
Cytochrom_D1
PQQ
Beta-prop_NUP159_NUP214
WDR54
Motif
Other DBs
NCBI-GeneID:
120709485
NCBI-ProteinID:
XP_039851069
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Position
5K:23500089..23510074
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AA seq
508 aa
AA seq
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MRWKRKIHHGGPSKQQQVSPLADEVCAIDKEVSHLCRIKSEPSQRTRASIYAGQKRPVST
FKLLSGRESNCSGMGRFSSADCSYALRKHLPVKGPWCVDDMDSEAYISQFSADGSLLIGG
FRGSHIRVYNSEKNWKVHKDITCKRLRWTISDIALSPDQQFLAYSSLSPTVHIVNVQNAV
RESHANITEIHEGLEFSDDDDEFSFGIFSVKFSKDGRELVVGNNNESICIYDLGANKVTE
RINAHVADVNVVTFADETNDILYSGSDDSLCKVWDRRCHKKQKPVGVLTGHLDGITFIDS
RGDGHYFISNCKDQTIKLWDLRKMSSTTKERTMLHCIVRRIKTVLQHACPMGKGNIFRLT
SNAYKSCTPKAYEWDYRWMTYPSEARYLKHPYDQSLATFRGHSVLRTLIRCYFSPMHSTG
QRYIYTGSSDQCVYIYDVATGKVVEKLRWHGSIIRDCSWHPYLPTLVSSSWDGYLVRWEA
TEDDRDPSMLRTGKQRMHPEGYTMSFVL
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgcggtggaaacgaaagatacatcatggaggaccatctaaacaacaacaggtcagtcca
cttgcggatgaagtatgtgccattgacaaggaggtttcccatctgtgtagaattaaatct
gaaccaagtcagaggactcgtgcatccatttatgctggccagaagagacctgtctctaca
ttcaagctattatctgggagagaatccaattgctcggggatgggcaggttctcttcagct
gattgctcttatgctcttcggaaacacctaccagtgaaaggcccatggtgtgtggatgac
atggatagtgaagcttacatctcacagttctctgcagatggttcacttttaattggtggg
ttccggggaagccacatcagagtctataactccgaaaaaaattggaaggttcataaagat
ataacctgcaaacgtctgcgctggacaatttcagatattgctctctcacctgatcaacag
ttcctggcttattctagtttgtcgcctactgttcacattgtaaatgtccagaatgctgta
agggaatcacatgctaacattacagaaattcatgagggtctggagttttctgacgatgat
gacgaattctcctttgggatattctctgtaaaattctcaaaagatgggcgagaacttgtt
gtgggaaacaacaatgaatcaatatgtatttatgatcttggagcaaacaaagtaacagaa
cgcattaatgcacatgtggctgatgtcaatgtggtcaccttcgctgatgaaacaaatgat
atcttgtactctggaagtgatgatagcctttgtaaggtttgggataggcgctgccacaag
aaacaaaaaccagtaggtgttttgaccggtcatttagatgggattacatttattgatagc
cgtggagatgggcactattttatctcaaactgcaaggatcagactattaaattatgggat
ctcaggaaaatgtcctccactacaaaagagagaactatgttgcattgtattgtgaggagg
ataaaaacagtactacagcacgcctgcccaatggggaaaggaaatattttcagattaacc
tctaatgcttacaagagctgcacacctaaagcgtatgaatgggattacagatggatgaca
tacccgtcagaagcccgatatttgaagcatccatatgatcagtcactagccacattcaga
ggccattctgtattgcgcacacttatccgttgttatttttcaccaatgcacagcacgggg
cagaggtacatatacacaggatccagtgaccaatgtgtctatatttatgatgtggcgaca
ggtaaggttgttgaaaaactgagatggcacgggtccatcattagagactgctcatggcac
ccgtacctccccacacttgtcagctcttcttgggacggctatttggtccggtgggaggca
acagaggatgacagagacccctccatgctcaggacagggaagcagaggatgcatccagag
ggatacacaatgtcgtttgtcctttag
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