Panicum virgatum (switchgrass): 120709486
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Entry
120709486 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP98B-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120709486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120709486
03036 Chromosome and associated proteins [BR:
pvir03036
]
120709486
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120709486
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120709486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
120709486
NCBI-ProteinID:
XP_039851078
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Position
5K:23515240..23521853
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AA seq
609 aa
AA seq
DB search
MMGSSSSWSAQTFGSSSSCLGAGFGQTVGSVSFTPWGASEQGSRVCAYAPTAIDDPPNLY
QIQSISAMLVNCNKSHEELRHEDYERGDRGGDSLQKSINPAPIFPVSSSPSFGLSCSSTP
YFTFRPATHCIAPFPESTEHPPAELQPSTRGSSSSSNPFWLPSAQSSFSSGDLQSLTKGH
SSYTPGLPFYHYLPSKLASMGIQTPPPSHTEFQKNPSTYCPSSYQSPFTAQVGGAHSVSA
STQSMTTATLLCPHFSTDTSVPTMCQDNIFSNSAGALNTALAEATSTRQGTFGRNFPTTS
TQPGKGPLIGSSTAHSKPALSSDAHCTSVNVDYPNNTLELHLPVNVRLVHIHFSSSNDGA
GNSQVHSDHVAKSTEAPISLSIYPGENHELTIQSVARPAKDQMSKQSSSTGGSDPSKVHN
SIGHPPSRSTGNQEGNNGDAHSTQKSLAAPECEVNTGSVLPRLYNADYYTVPSIVELAVK
ESEEPGYCSRVPHFTVGRHGYGSVRFDGETDVRKLDIASIVEFSNREILVYRDQSKTPPV
GQGLNKPAEVTLLNVKCIDQKTGLQFTGGPTVDRYKETLVQWTKEHDAEFVSFDPMKGEW
KFKVKNFSQ
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgatgggctcttcttcatcttggtctgcccaaacctttgggtcctcttcatcttgtctt
ggcgcaggctttgggcaaaccgtgggctctgtctccttcactccatggggggcatctgaa
cagggcagcagggtctgtgcttatgcgcctaccgctattgatgatcctcctaatttgtat
cagattcaatcaatttcggcaatgctggtaaactgcaataagtctcatgaagagcttcga
catgaagattatgagagaggggacagaggaggtgacagcctgcagaaaagcattaatcca
gctcctatatttcctgtgtcctcatcaccatcatttggtttatcctgttcaagtacacca
tatttcactttcaggccggcgactcactgcattgctccatttccagagtccactgagcac
ccccctgcagaattacagccctcaacacgaggttcctcctccagttccaacccattctgg
ctcccatctgctcagtcatcattttcatctggagatttgcaatccttaacaaaaggtcat
agttcttacactcctggactgccattttatcattacctgccctcaaagctagcatccatg
ggaatccaaacaccacctccatcacacaccgagtttcaaaagaatccctccacctattgt
cctagctcataccagtcaccttttactgcacaagtgggaggggcacattcagtttcagca
tcgacacaatctatgaccactgcaacattactgtgcccccatttttcgactgacacttct
gtacctactatgtgtcaggacaatatattcagcaactcagcaggtgcattaaatacagct
ttagcagaagcaacttctactcggcagggtacattcggtcgaaactttcccacaacatct
actcaacctggaaaaggtccattgattggttcttcaaccgcccattcaaaaccagctcta
tcttcagatgctcattgtactagcgtcaatgttgactatcccaataatactttagagttg
catcttccagtcaatgtcagattagtacacattcatttttcgtcgagcaatgatggcgct
ggaaattcacaggttcattctgatcatgttgctaaatctacagaagcacctatttctcta
tctatctatcccggggagaatcatgagctgactatccaatcggttgcgagacctgctaag
gatcaaatgagcaaacagtctagttcaactggtggatctgatcccagcaaagttcacaat
agcattggtcatccaccatcaagatctactgggaatcaggaggggaataatggtgatgcc
cattcgacccagaaatcattagctgcaccagaatgtgaagtgaacaccgggagtgtgctg
cctcggctctacaatgcagattactacactgtgccgtcaattgtggaacttgccgtgaag
gagagtgaagagccaggttactgctcccgtgtgccgcacttcacggtaggcaggcatggc
tatggcagcgtcaggtttgatggggagactgatgtgcggaagctcgatatcgcatcaatt
gtggagtttagcaaccgtgagatccttgtatacagagatcagagcaagacgccacctgtt
gggcagggattgaacaaacctgcagaggtcactctcctaaacgtgaagtgcatcgaccag
aagactgggttgcagttcacaggtgggccgacagtcgacagatacaaggagaccctggtg
caatggaccaaggagcacgacgcggagttcgtgtcctttgacccgatgaagggggagtgg
aagttcaaagtcaagaatttcagccagtag
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