Panicum virgatum (switchgrass): 120709510
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Entry
120709510 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 6-like
KO
K11843
ubiquitin carboxyl-terminal hydrolase 14 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120709510
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120709510
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120709510
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120709510
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120709510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
ubiquitin
Peptidase_C98
Motif
Other DBs
NCBI-GeneID:
120709510
NCBI-ProteinID:
XP_039851113
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All DBs
Position
5K:33971859..33978811
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AA seq
478 aa
AA seq
DB search
MPTVSVKWQKEVFPGIEIDTSQPPIVFKSQLYTLTGVPPERQKIMVKGGILKDDADWSTL
GVKDGQKLMMIGTADEIVKAPEKGPVFVEDLPEEEQVVALGHSAGLYNLGNTCYMNSTLQ
CLHSVPELKSALLSYSDTGRGNGIDQASHNLTLATRNIFGELDQSVRPVAPLQFLQTLRK
KYPQFAQQHNNVYMQQDAEECWTQLVYTLSQTLTSDASESAALSMKQLFGIDLVSRVHCA
ESGEESTETESVYSLKCHISQDVNHLHEGLKHGLKTELEKISPALGRTAIYTRESRINEL
PRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYEFCSDELKQKLQAPRQMLRDAENA
KFGLKTEAKASSSKENEGSSSTAWDSSSMDIDKADTSVPKKQLTGVYDLVAVLTHKGRSA
DSGHYVGWVKQDNGKWIEFDDDNPNNRKEEDILKLSGGGDWHMAYICLYKARVAESKS
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgccgaccgttagcgtgaaatggcagaaggaggtctttccaggcatagagattgacact
agccagccgccaattgttttcaagagtcagctttacacactaacgggtgtaccacctgag
cgccaaaaaattatggtgaagggtggaatattgaaggatgatgcagattggtctactttg
ggagtgaaagatggtcaaaaattgatgatgataggaacagctgatgaaattgtgaaagct
ccagagaaaggtccagtgtttgttgaggatctaccagaagaagagcaagtggtcgcactg
gggcacagtgctggtctttataaccttgggaatacatgctacatgaattccacattgcaa
tgtctgcattctgttccagagctgaagtcagcgctactaagctattcagatactggaaga
ggtaatggcattgaccaagcctctcataatttgactcttgcaactcgtaatatctttggt
gagcttgatcaaagtgttcgtcctgttgcacctctacaattcttgcagacattgcgtaaa
aaatatccacaatttgcccagcagcacaataatgtctacatgcaacaggatgcagaagaa
tgctggacacagctggtgtatacactttctcaaactcttacatcagatgcaagtgaatct
gcagctctttcgatgaagcaactgtttgggatcgatctcgtgagcagggtccattgtgca
gaaagtggtgaggaaagcacggagacggaatcagtttattccctgaagtgtcatatatct
caagatgtgaaccaccttcatgagggacttaagcatggcttgaagacagaacttgagaaa
atttcacctgcactgggtcgcactgcaatttatactagagagtcgagaataaatgagctg
cccaggtacttgactgtgcagttcgtacgtttcttttggaaaagggaatcaaaccaaaag
gcaaagattttgcgcaaagttgattaccctctggaactggatgtttatgaattttgctca
gatgaactgaagcagaaactccaagctcctcgacagatgctgagggatgcagaaaatgca
aagtttggattgaaaacagaggcgaaagctagcagctcaaaagaaaatgaggggtcatca
agtaccgcttgggactcatccagcatggacattgacaaagctgatacttctgtaccaaag
aaacaattgactggtgtctacgatttagttgctgtattgacacacaagggaagaagtgca
gactctggccactacgttggctgggttaagcaagataacggaaaatggatcgagtttgat
gatgacaacccaaacaatcgcaaggaagaagatattttgaaactatctggaggaggtgac
tggcacatggcatatatctgcctgtacaaagctcgtgtggctgaatcgaagagctag
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