Panicum virgatum (switchgrass): 120709515
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Entry
120709515 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120709515
09122 Translation
03013 Nucleocytoplasmic transport
120709515
03015 mRNA surveillance pathway
120709515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120709515
03041 Spliceosome [BR:
pvir03041
]
120709515
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120709515
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120709515
Spliceosome [BR:
pvir03041
]
Complex C
Other components
EJC/TREX
120709515
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120709515
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Dark_CARD
Motif
Other DBs
NCBI-GeneID:
120709515
NCBI-ProteinID:
XP_039851122
LinkDB
All DBs
Position
5K:complement(34016397..34021575)
Genome browser
AA seq
428 aa
AA seq
DB search
MVEAKDNEVYEEDLVDYEEEVENVADGAPTNGSADVVKKGYVGIHSSGFRDFLLKPELLR
AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICHEFERFSKYLPELRVAVFYGGVHIKNHKDLLKNECPHIVVGTPGRILA
LARDKDLPLKNVRHFTLDECDKMLESLDMRRDVQEIFKMTPRDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLGECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKALPDQI
DTSIYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggtggaggcgaaggacaacgaggtgtacgaggaggatctcgtcgactacgaggaggag
gtggagaatgtcgccgacggcgccccaaccaacggctccgccgatgtcgtcaaaaagggg
tacgtggggatccacagctcggggttcagagacttcctgctcaagccggagcttctccgg
gccatccaggattgcggatttgagcatccttccgaagtgcaacatgaatgcatccctcaa
gccattcttggaatggatgttatctgtcaagcaaaatctgggatgggtaagactgcggtt
tttgtcctctcaactcttcagcagattgatcctgttgctggtcaagtagctgcacttgtg
ttgtgccacacaagagagctagcttaccagatttgccatgaatttgagagatttagcaaa
tacctgcctgaattaagagtcgctgtcttctatggtggtgttcacataaaaaatcataag
gatctgttgaagaatgaatgcccccatattgtggttggcacgcctggaaggatacttgct
ctagctagagataaggaccttcccttgaaaaacgtgcggcatttcactcttgatgaatgt
gataagatgcttgaatcacttgacatgcgtagagatgtccaggagatcttcaaaatgact
ccccgtgataagcaagtgatgatgttttcagcaaccctcagcaaggaaattcgcccagtt
tgcaagaaattcatgcaagatcctatggaaatttatgttgatgatgaggctaaactgacc
cttcatggtctagttcagcactacatcaaattgagtgaggcagagaagaatcggaagttg
aatgatctcttagatgcgcttgacttcaaccaagtggtgatatttgtcaaaagtgttagt
agagctgcagagctgaacaagttgctcggtgaatgcaatttcccctcaatctgcatacat
tctggaatgacgcaagaagagaggttgacccgatacaagaacttcaaggaaggacacaag
aggattcttgtggctactgatttggtcggtaggggaattgatattgagcgtgtcaacatt
gttgtaaactatgatatgccagattctgcggatacctacttgcatagggttggtcgggct
ggacgttttggcaccaagggacttgcaataacatttgtttcttctgcatccgattctgat
gttctcaatcaggtgcaagaaaggtttgaggttgacataaaggcactgcctgatcagatt
gacacttcaatatacatgccatcttga
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