Panicum virgatum (switchgrass): 120709648
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Entry
120709648 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SINA-like 2
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120709648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120709648
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120709648
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120709648
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_RING
Sina_ZnF
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
120709648
NCBI-ProteinID:
XP_039851256
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Position
5K:complement(9003464..9004513)
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AA seq
275 aa
AA seq
DB search
MEGDGITGKRREGALEEGGSSAKRLKCSIEPEAFSCDACGRPLWLPIFLCSDGHFLCSSC
RDELPEGKCSECSGALARSHVMERAVQSILVDCGAGCAVKTAYGRDCAPHRLICPYAPCE
CPEPGCRFAGPQEELLDHLAGHHKWPSTTFGYWAPFDLRVAEPGSHPAAEPHGYAVSLVR
VQYINITGCSVSFSCSPRHRITAAVGNVWPLWYAGWPPEKYVCFVPKASDGPDAAAGIVL
TINIDITPADDADEDDDPDYSSYVQSDEDDDGDSS
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atggagggagatggcatcactggcaagagaagggaaggtgctctggaagagggagggagc
agcgccaagagactcaagtgcagcatagagccggaggccttcagttgtgacgcgtgcggc
cggcccctctggcttccgatattcctgtgttccgatgggcacttcttgtgctcgtcctgc
cgcgacgagctgcctgaaggcaagtgctctgaatgttccggcgccctcgcgcgcagccac
gtcatggagcgcgccgtccagtccatcctcgtcgactgcggcgccgggtgcgccgtgaag
accgcctacggccgcgactgcgcgccccaccggttgatttgtccttacgcgccgtgcgaa
tgcccggagcccggctgccgctttgcgggtccgcaggaggagctactggaccacctcgcc
ggccaccacaagtggccgtcgacgacgttcggatactgggcgcccttcgatctccgcgtc
gccgaaccgggctcccacccggcggcagagccgcacgggtacgccgtctccctcgtccgc
gttcagtacatcaacatcactgggtgctcggtgtccttctcgtgctcgccgcgccatcgc
atcactgcggcggttggcaatgtatggcccttgtggtatgctggttggccgccggagaag
tacgtctgttttgtgcccaaggcttctgacgggccggacgccgccgcaggcatcgtcctc
acgatcaacatcgacatcacacctgctgacgatgctgatgaagatgacgacccggactac
agtagctacgtccagagcgacgaggatgacgacggtgatagctcgtga
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