Panicum virgatum (switchgrass): 120709655
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Entry
120709655 CDS
T07260
Name
(RefSeq) putative E3 ubiquitin-protein ligase SINA-like 6
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120709655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120709655
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120709655
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120709655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_RING
Sina_ZnF
ZnF_RZ-type
Motif
Other DBs
NCBI-GeneID:
120709655
NCBI-ProteinID:
XP_039851263
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All DBs
Position
5K:complement(9061429..9062651)
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AA seq
300 aa
AA seq
DB search
MEKRSGARAAKENATTKKPRMLRKSPVAMKQQRQDEGHEPRTLSVTLDRDALECPLCFSP
FEASIFQCKNGHAACEACCARTHRVCPSCAEPIGDIRCRPLENAIAGMLVPCAFAEHGCT
WRLRFAEKQVHEALLCQHAPCACPVPGCAYAGLELGDHIRDAHAAAGDGDGDGNDVVSFA
GSAAVTLRRGTPFRVLLHETDARVFLLLNGGGVPSGRSLSVVCVGPRPCGNKSLEYTLQV
GGGGEPGALALSASGPVPCTCRWAGHHPTEAFLFVPDAYWGSSGSVSVTVPVRKVTADKV
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaggagcggcgccagggcagcgaaggagaacgccacgacgaagaagccgagg
atgctccggaaatcgcccgtggccatgaagcagcagcgccaagatgaaggccacgagcct
aggaccctcagcgttaccctggaccgcgacgccttggagtgcccgctctgcttctccccg
ttcgaagcatccatcttccagtgcaagaacgggcacgccgcgtgcgaggcctgctgcgcc
cgcacccaccgggtgtgcccgtcctgcgccgagcccatcggcgacatccgctgccggccg
ctggagaacgccatcgcgggcatgctcgtcccctgcgcgttcgccgagcacggctgcacg
tggcgcctcaggttcgccgagaagcaggtccacgaggcgctcctctgccagcacgccccg
tgcgcgtgccccgtcccggggtgcgcctacgccggcctggagctcggcgaccacatccgg
gacgcgcacgccgcggcgggcgatggcgacggcgacggcaacgacgtcgtcagcttcgcc
gggtccgcggcggtgacgctgcgccgcggcacgcctttccgggtgctcctgcacgagacg
gacgcgcgcgtcttcctgctgctcaacggcggcggcgtgccctccgggcggtcgctgtcc
gtggtctgcgtcggcccccgcccctgcgggaacaagtcgctggagtacacgctgcaggtc
ggcggcggcggcgagcccggcgcgctcgcgctgtcggcgtcgggacccgtgccgtgcact
tgccgctgggcggggcaccacccgaccgaggcgttcctgttcgtgccggacgcgtactgg
ggctcctccggcagcgtctccgtcaccgtccctgtcaggaaggtgaccgccgacaaggtc
tga
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