Panicum virgatum (switchgrass): 120709661
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Entry
120709661 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120709661
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120709661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120709661
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120709661
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120709661
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sina_ZnF
zf-TRAF_2
DUF4729
DM
zf-TRAF
Motif
Other DBs
NCBI-GeneID:
120709661
NCBI-ProteinID:
XP_039851268
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All DBs
Position
5K:complement(9168719..9172092)
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AA seq
285 aa
AA seq
DB search
MTAVEGMDEPQINFRMSVSLFHCGACFRPLKPPTFKRFACSVRPGTACAAPAATATARSA
TAPRTYAACDGEDAFLQDAKLPCAYKEFGCESYVVYHKEADHLRACPWAPCSCPDHGCRV
FTSPARLLEHLGGRHSWPVTGVSYGKPCKLPVPPPQGWHVLVGGEDRCVFLVSASALGAA
TAVSLVCVRANGDAAAAGAPQFECRIWVEAPGASGSTAMIASTVRSSSLSRGFVAADQDM
FLAVPPELLHGASGETPILSVRINKVRDAADSSTRAAARSSRRLQ
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggtggaaggcatggacgagccccagatcaactttaggatgtcggtctccttg
ttccattgcggagcttgcttccgtcccctgaaacctcccacgttcaagcggtttgcatgc
agtgtgaggcccggcaccgcgtgtgcggcacctgccgcgacagccacagccaggtctgca
accgcgccgcgcacctacgccgcctgcgacggggaggacgccttcttgcaggacgccaag
ctgccgtgcgcgtacaaggagttcgggtgcgagagctacgtcgtctaccacaaggaggcc
gaccacctccgggcgtgcccatgggcgccctgctcgtgcccggaccacggctgccgcgtc
ttcacctcgccggcgcggctgctcgagcacctcggcggccgccactcgtggccggtcacc
ggcgtgagctacgggaagccgtgcaagctgcccgtgccgccgccgcagggctggcacgtc
ctcgtcggcggagaggaccggtgcgtgttcctcgtgtcggcgtccgcgctcggcgcggcc
acggcggtgtccctggtgtgcgtgagggcgaacggcgacgcggcggcggcgggggcgccg
cagttcgagtgcaggatctgggtggaggccccgggcgccagcgggtccacggcgatgatc
gcgtccacggtaaggagcagcagcctgtctcgtggcttcgtggcggctgaccaggacatg
ttcttggccgtgccgccggagctgctgcacggcgcgtccggcgagacgcccatcctctcg
gttcgcattaacaaagtccgtgatgctgcagactccagtactcgagccgcagcaaggagc
tccaggagactgcagtag
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