Panicum virgatum (switchgrass): 120709665
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Entry
120709665 CDS
T07260
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120709665
03015 mRNA surveillance pathway
120709665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120709665
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120709665
mRNA cycle factors
P-body specific factors
120709665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
PsiA
Motif
Other DBs
NCBI-GeneID:
120709665
NCBI-ProteinID:
XP_039851274
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All DBs
Position
1K:complement(42717071..42729220)
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AA seq
1193 aa
AA seq
DB search
MDNVQNENRTDTKQDDEARQSKQDDEEARLEEHKKIIDQKTSLRQSNLNPERPDANYLRT
LDSSIKRNTTVIKKLKTINDEQKDGLMDELKSVNLSKFVSEAVSYICEAKLRSADIQAAV
QVCSMLHQRYKDFSPCLIQGLLKVFFPGKSGDDLDADKNSRAMKKRSTLKLLIELYFVGI
VEDASIFVNIIKDLTSAEHLKDREATQTNLSLLSTFARQGRFLVGLQSHGQEAYDEFFKD
LNVTADQKKFFKKALNSYYDAVAELLQSEHASLRLMEAENAKVLSAKGELSDENTASYEK
LRKSFDQLLRGVSSLAEALDMQPPVMPDDGNTTRVTTGTDVSTSSGKESSTLEPIWDDED
TKVFYESLPDLRAFVPAVLLGEVEPKSNEQHSKGREQSSESTSEQETELHDNAQTSATEH
QLEVKVDDGVKDSEDKDKDRGKDGEKEKPKEKDLDKKNEREKEKVRALDGASLDNLLQRL
PGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVNRTSLELLPYYSRLVATLSTCMKDV
PSMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKACLDDFS
HHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCK
PPERSARISKVRPPLHQYIRKLLFSDLDKSSAEHVFRQLRKLPWAECQQYLLKCFLKVHK
GKYSQVHLIALLTASLSRHHDDFAVAVVDEVLEEIRVGLELNDYGMQQRRLAHMRFLGEL
YCYKLIDSSVVFETLYLIIVFGHGTPEQDVLDPPEDCFRIRLIITLLQTCGHYFSKGSSK
RKLDKFLLHFQRYIMIKGPIPLDIEFDIQDLFADIRPNMSRYSSIEELNAALIELEENER
SAPVEKAENERHSDNESQKRQPRDGAASVNGQSATNGVEENGKDHEVADSESYSGSGSID
GREDEDILSDDKSNDGSDNEGDDEDDGIPVGSDEEENVEVRQKIMQVDLKEQEDFDRELK
ALLQESLESRKSEARSRLPLNMMVPMNVLEGSKDQRATESESGEETVDEEGGNVGGSKVR
VKVLMKKGHKQQTKQMLIPADSSLVLSTKQQEAAELEEKQSIKRRILEYNEREEEELNGG
ASQMGNWGQGASTTSSIRSGGRGSWDGPTRGGGRQRHHIAGSGGFYHSYGRRR
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggataatgttcaaaatgagaaccgaactgacaccaagcaagatgatgaggcgcgccaa
agcaaacaggatgatgaggaggcccgtcttgaagaacataaaaaaattattgatcaaaag
acttccctccgccagagcaacctaaatcctgaaaggcctgatgcaaactacctgagaact
ctggactccagtatcaagcgaaatacaacagtgataaagaagctgaagacaataaatgat
gaacagaaggatgggctaatggatgagttgaaaagtgtgaatttgagcaaatttgtcagt
gaagcagtttcttatatttgtgaggccaaacttcgctcagctgatatacaagctgcagtt
caggtttgctcgatgcttcatcaaagatacaaggacttctctccttgtcttatacaaggt
ctactgaaggttttctttcctggaaaatctggagatgatttggatgcagacaaaaattca
agagccatgaagaagagaagcacattgaaacttctgattgaactgtactttgttggaatt
gttgaagatgctagcatatttgtaaatatcataaaagatcttacatcagcagaacatttg
aaggaccgtgaagcaactcagacaaatttgtctcttctatccacttttgctcgtcaaggg
aggtttcttgtaggtctacagtctcacggtcaagaagcttatgatgaattctttaaggac
ctaaatgttacagctgatcagaagaagttctttaagaaagccttgaactcttactatgat
gctgtagctgaactactacaatcagaacatgcgtctcttcgtctaatggaggcagagaat
gcaaaagttctaagtgccaaaggtgaactaagtgatgagaacacagcctcatatgagaaa
ctcaggaagtcttttgatcagttgctacgtggtgtatcctcgctggccgaagctcttgat
atgcagcctccagtgatgccagatgatgggaatacaacgagggttactacaggaactgat
gtctcgacctcttctggaaaagaatcatccacactggaacctatttgggatgatgaagat
accaaagttttttacgagtctttacctgatctcagagcatttgtgccagctgtattgttg
ggagaggttgaacctaagtcaaatgagcaacactctaagggccgtgagcaatctagtgaa
tccacttcagaacaagagactgaactacatgacaatgctcaaacttctgccactgaacat
caactggaagtaaaagtagatgatggagtcaaagatagcgaggacaaagataaagatagg
ggaaaagatggagaaaaggaaaaacctaaggagaaggatctggataagaaaaacgaaaga
gagaaagagaaagtaagagccttggatggcgcaagtttggacaacctcctgcagaggttg
cctggatgtgttagccgtgatcttattgatcaattgacggttgagttttgctacttaaat
tctaaagcaaatcgaaagaaacttgtgcgtgccttattcaatgtcaataggacttcactg
gaactgttgccttactattctcgtttggttgcgacactatcaacttgtatgaaagatgtt
ccaagtatgctactctctatgcttgaagaggagttcaactttttaataaataagaaggat
caaatcaacattgaaacaaaaataaaaaacataaggtttattggggagctgtgcaagttc
aagatggctcctccagctcttgtttttagctgtttgaaggcctgcctagatgatttcagt
catcataacatcgatgtagcctgcaaccttctcgagacttgtgggcgttttttgtatcgc
tcacctgaaactacaattcgcatggctaacatgctggagatactgatgagattaaagaat
gtcaagaatttggacccacgtcacagtacacttgtagaaaacgcctactacctttgtaaa
ccgccggaaaggtctgcgcgaatctcaaaagttcggccacctttgcatcaatacataaga
aagttgcttttctcagatcttgacaaatcaagtgctgaacatgttttccgccaactacgc
aagttaccttgggcagaatgtcaacagtaccttttaaagtgcttcctaaaggttcacaaa
ggaaagtacagccaagttcatctgattgctcttctcactgctagcctcagccgccatcat
gatgactttgctgtcgcagtggtagatgaggttttagaagagataagggttggattggag
ttgaatgactatgggatgcaacaaaggcggcttgctcacatgcggttccttggggagcta
tactgctacaagcttatagattcatcagttgtatttgagacactgtaccttatcattgtg
tttggtcatggaactcctgaacaagatgtgttggatccaccagaagactgcttcaggatc
aggttgatcattacacttttacagacctgtggtcactacttcagtaagggatcttcaaaa
aggaagctcgacaaatttttgctacactttcaaagatacattatgattaaagggcccata
ccacttgacatagagtttgacattcaggatttatttgctgatatccgaccaaacatgtct
aggtattcatcaattgaagaactaaatgctgcattaatcgagctcgaggaaaatgaacgt
tcagctccagtagaaaaggctgaaaatgaaagacactcggataatgaatctcagaaaaga
cagccccgagatggtgctgcatctgtgaatggtcaaagcgcaacaaatggagttgaggaa
aatggcaaagatcatgaagtagcagacagtgagagctattcaggcagtggcagcattgat
gggcgggaagatgaggatatattatctgatgataaatcaaatgatggctcagataatgaa
ggtgatgatgaagacgatggtattcctgttggttctgatgaggaagaaaatgttgaggtt
agacagaaaatcatgcaggttgatctgaaggagcaagaagattttgatcgagagctgaag
gcccttcttcaggagagcttggagtcgcgtaaatcagaggctcgttcaaggctccctttg
aacatgatggtaccgatgaatgtccttgagggttcaaaagaccaaagggccacagaatcc
gagagtggggaagaaacagtggatgaagagggtggcaatgttggtggcagcaaggtgcgt
gttaaggtgctgatgaagaaaggacacaaacaacagacaaagcaaatgttgatccctgct
gacagctcactcgtgctaagcacaaagcagcaagaagctgccgagcttgaggagaagcag
agcattaaacggaggatccttgaatacaacgaaagggaggaggaagagctgaacggagga
gcatcgcaaatggggaattggggtcaaggagctagcactactagcagcatcagatcaggt
ggacggggaagctgggatggtcccacgcggggaggtggtcggcaacggcaccacatcgcg
ggctcaggtggtttctatcacagttacggcaggaggagatag
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