Panicum virgatum (switchgrass): 120709712
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Entry
120709712 CDS
T07260
Name
(RefSeq) protein argonaute 4A-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120709712
03036 Chromosome and associated proteins [BR:
pvir03036
]
120709712
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120709712
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120709712
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120709712
microRNA pathway
RISC loading complex
120709712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
PAZ
ArgoN
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
120709712
NCBI-ProteinID:
XP_039851312
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Position
5K:complement(14304277..14309597)
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AA seq
885 aa
AA seq
DB search
MWERSRMSRDGRPDDKCATKGQKIRLLANHFKVSVHSADVIFHHYSVELMYENDKNNKQV
DGMGVRRKVIDKLQEIYASELTNVNFAYDGDKSLFTIGALPHVKNVYTVVVEDASSAKVA
TSMTPGENKSPGGSDMKRMKRPFQVRIFKVELSFAGTVPMDSIARVIRGQESDNYEKAIQ
VLDIILRQNSAKKGCLLVRQSFFDNSLSNSIDLHGGIKGLQGYHSSFRLTQSGLSLNVDV
STTTIVRPGPVIDFLLSNQDIKDIRRINWGKAKDVLKSLRIKTTHTNAEFKIFDLSEKSC
SEQTFLWKKRNGNSSDAVEITVYEYFKQHWHIELKQSAHLPCLNVGKPKRSNYLPIELCY
LVSLQRYKKALTVLQRSSLVEKSRKNPSKRKSDLSSALKCSNYNSDAMLRRCGILIASEF
AQVDGRILRAPTLKAGNDQDLIARNGRWNFNNKKLIDPKQVNRWAAVNFSTRWNVQDLVQ
GLIRCGEMKGIKIESAHTIFEENLQMRDLPGTPENRVDNMMNQIHQRLPGRPTFLLCVLP
VRKNCDIYGPWKRKCLVESGIVTQCMAPEYGRTKLDDQYLTNLLLKINAKLGGLNPQLQI
ERNRAIPLVSRNPTIIFGMDVSHSVAKKSNIPSVAAVVGSLGWPLISRYRASVCTQSPKL
EMIDSLFKLEGGKDNGLIRELLLDFYSSTKRQKPEQIIIFRDGVGEGQFNQVLNIELDQM
VKACKFLDDSWFPRFTVIVAQKNHHTRFFVPKGPRDDNVTNVPAGTVVDTGICHPRNYDF
YMCAHAGMIGTTRPTHYHVLHDEIGFSPDDLQELVHSLSYVYQKSTSAISVVAPVYYAHL
AAAQVRQFVRFDDMSEAASSASGTPSPLPELPRLHENVRSSMFFC
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgtgggagagaagcaggatgtcgagggatggcaggccagatgataaatgtgcaacaaaa
gggcagaaaataaggcttcttgcaaaccacttcaaagtttcagttcacagtgctgatgta
atcttccaccactacagtgtggaattgatgtatgagaatgacaaaaataataaacaagtg
gatggaatgggtgtgcgtagaaaagtgattgacaagttgcaggagatctatgcctccgag
ctcacaaatgtgaactttgcttatgacggtgacaagagcctattcactattggcgccctg
ccgcacgtcaagaatgtgtacactgtcgtagttgaggatgcttcatctgcaaaggttgca
acgagtatgacccctggagaaaataaaagtcctgggggcagtgacatgaaaaggatgaaa
cggccgttccaggtacgaatctttaaagtggagttgtcctttgcaggaacggttccgatg
gactccattgcccgagtcattcgtggtcaggaatcagacaactacgagaaagctattcaa
gtcctcgacatcatactgaggcaaaactccgcgaagaagggctgccttctggttcggcaa
tccttttttgacaacagcctttccaattcaattgacttgcatggtggaattaagggtttg
caaggatatcattccagctttcgacttactcaaagtggtctctcacttaatgttgatgtg
tctacaacaacaattgtcagacccgggcctgtcattgattttctcctgtccaaccaggat
atcaaggacattcgtagaattaactggggcaaagctaaggatgtgttaaagagcttaagg
atcaaaaccacccacacaaatgctgagttcaaaatttttgacttgagtgaaaagtcttgc
tctgaacaaacgttcttatggaagaaaagaaatggcaatagctctgatgcagtggaaata
acagtctatgaatacttcaagcagcattggcatatagaattgaaacaatctgctcacctc
ccctgtttgaatgtgggaaaaccaaagcgttcgaattatctaccaatagagctttgctat
ctggtttcactgcaaaggtacaagaaggctcttactgtactacagagatcctcgctggtt
gagaaatcccggaagaatcctagcaagaggaagtcagatttatcttctgctctgaaatgc
agtaactacaattctgatgccatgctgaggcggtgcggcattttgatagcttcagagttt
gctcaagttgatggtagaatccttcgagctccaacgttgaaagctggaaatgatcaagat
cttattgcacgcaatgggaggtggaacttcaacaacaagaagctcattgatcccaagcaa
gtgaatagatgggctgctgttaatttttccacgcggtggaacgttcaggatcttgttcag
ggcctcattcgttgtggtgaaatgaagggaattaaaattgaatctgctcatacaatattt
gaggagaatcttcaaatgagggaccttccagggacgccagagaacagggtggataatatg
atgaatcagattcatcagaggcttcctgggcgtccaacttttctcttatgtgttcttcca
gtcagaaagaactgtgacatttatgggccttggaagcgaaaatgtcttgtggaatcaggc
attgttacacaatgtatggcacctgagtatgggcgcaccaaacttgatgatcagtacctc
acaaatttactgttaaagataaatgccaagctcggtggattgaatccacaacttcaaatt
gaaagaaaccgtgccattcctctcgtatccagaaatccaaccataattttcggtatggat
gtttcccacagtgttgcaaaaaagtccaatataccatccgttgctgctgttgttggttcc
ttggggtggcctctcatttcaagatacagagcttctgtgtgcactcagtcacctaaacta
gagatgattgattccttgttcaagctagaggggggtaaagataatggcctcataagggag
ctactattagacttctacagcagcactaaacggcaaaaaccagaacaaatcatcattttc
agggatggagttggtgagggccagtttaatcaggttctgaacattgagctggatcagatg
gttaaggcatgcaagtttcttgatgatagctggttccccaggttcactgtgattgttgca
cagaagaaccaccacacaaggtttttcgtgcccaaaggccccagagacgacaatgtgact
aatgtccctgctggtactgttgtggacacgggaatctgccatcccaggaactacgatttc
tacatgtgtgcacatgctggcatgattgggacaactaggccaacacattaccatgtgttg
catgatgagattggcttctctccagatgacctgcaggagctcgtgcactccctctcatat
gtgtatcagaagagcacctcagccatatcagtcgttgccccggtgtactacgcgcacctg
gcggcggcgcaggtcaggcagttcgtcaggttcgacgacatgtcggaggccgcgtcgtcg
gccagcggcaccccttcgcccctgccggagctgcctcggctgcatgagaatgtcaggtct
tccatgttcttctgctga
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