Panicum virgatum (switchgrass): 120709727
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Entry
120709727 CDS
T07260
Name
(RefSeq) protein argonaute 4A-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120709727
03036 Chromosome and associated proteins [BR:
pvir03036
]
120709727
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120709727
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120709727
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120709727
microRNA pathway
RISC loading complex
120709727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
PAZ
ArgoN
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
120709727
NCBI-ProteinID:
XP_039851322
LinkDB
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Position
5K:14978841..15011671
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AA seq
946 aa
AA seq
DB search
MARCRSGHPPRAGPEPEWKKPSPFGALARHAQHGGSECAPRSIGPTSPFRAGFAADKSPP
RSGSHRRVRERGPVTPASSEGKELAGRQFLRLPICRPGYGTKGGPIKLRTNHFKVSTDSR
DITFYRYHVNLKYEDDQPVAQKGVGRKVIDKLQETYASDLENLNFLAYDGEKSLFTIGAL
QNVRDVFTVVVEDASSTKTPGGDGSPEGSDMKRMKRLMRVKTFKVELSFAGKVPLSAITK
AIRSQESDDYQEGLQVLDIILRQHSARQGCLLVRQSLFHSPSKIINLGGGVVPCPGFHSS
FRLTQSGLLLNMYVSTTVILEPGPVTNFIMSSQYINDTRRIDWGKAKRTLKNLRIKTTHT
NSEFKIVGFSEKFCFEQTFPLKQRDGDTVQVTVYDYYLKHWGIKLKDSISFPCLNVGNRP
KRPTYLPIELCNLVSLQRYTKALTVPQRSSLVLNSRRNPSERKSDLSVALKLSNYNSDSI
LQKCGISIAPEFTQVDGRFLHAPKLKAGSGRDIFVSQGKWNFNNNRFILASTVNRWVVVD
FSSRCKIPDLVRRLIQCGKAKGMQIDPEDAVIGENPRMRRAPAQNRVKDMFDQIKRRFPK
KPPAFLLCILPERKNCDIYGPWKRACLADFGIVTQCLSPPPVINDQYVTNLLLKINAKLG
GLNSLLEMEEKHAIPLVSRVPTMILGMDVSHGSPQRDLPSVAAVVSSLDWPLISRYRAPV
CTQSPRLEMIESLFKQEGDNDRGLIRELIEDFGNSCRKLPQQIIIFRDGVSEGQFTQVLN
KELPQIIEACKFLQDDWSPKFMVIVAQKNHHTRFFRDSNDGSNVPAGTVVDKGICHHRGY
DFYMCAHAGRIGTRPTHYHVLYDEIGFTPDDLEELVHSLSYVYQRSTSAISVVAPVYYAH
LAAAQVRQFVKLDESSETGSSASGGPAPVPELPRLNDRVRSSMFFC
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgctgccgcagcgggcatcctccgcgggccgggccggaaccggaatggaagaag
ccatccccgttcggggcgctcgcccgccacgcgcagcacggcggcagcgagtgtgctcct
cgctcaattggtcccacctcgccgtttcgcgcggggttcgcggcggataaatctcccccg
cgctccggctcccaccgccgggtccgggagcgcgggcctgtcactccagcttcctcggag
ggtaaagagttggcgggtcgccaattcctcagactcccaatctgcaggcctggatatggc
acaaaaggaggtccaataaagcttcgtacaaaccacttcaaagtctcaaccgacagcaga
gatattaccttctaccgctaccatgtgaatctgaagtacgaagatgatcaacccgttgct
cagaaaggtgtaggcagaaaagtgatagataagctgcaggagacctatgcctcggatctg
gagaatctgaactttcttgcttatgacggtgaaaagagcctgttcaccattggcgccctt
cagaatgttagggatgtgtttacagttgtagttgaggatgcttcatctacaaagacacct
ggaggagatggaagtccagagggaagtgacatgaaaagaatgaagcggctgatgcgggtg
aagacatttaaagtggagttgtcctttgccggaaaggtcccattgagtgccattaccaag
gctataagaagccaagaatctgatgactatcaggaaggtcttcaggttcttgatatcata
ctgaggcaacactcagcaagacagggttgccttctagttcgacaatccttgttccacagc
ccctccaagatcatcaatttgggtggtggtgttgtaccttgtccaggatttcattccagc
tttcgactcactcaaagtgggcttttacttaatatgtatgtttctacaacggtgattctg
gaacccgggcctgtgactaattttataatgtctagccagtatatcaacgatactcgcaga
attgactggggcaaagcaaagcgtacattgaagaatttgaggatcaaaaccactcacacg
aactctgaattcaagattgttggcttcagtgagaagttttgttttgaacagacgtttcct
ctgaagcaaagagatggtgatactgtgcaagttacggtctatgattactacctgaagcat
tggggtataaaactgaaagattcaattagcttcccctgcttgaatgtggggaacaggcca
aagcgtccgacatatttacccatagagctatgcaatctggtttcgctgcaaaggtacaca
aaggctctgacagtgccacaacggtcctcgctcgtcctgaattcccggcgtaaccctagt
gagaggaagtcagacttgtctgtcgctctaaagctcagtaactataattccgacagcata
ctgcagaagtgtggcatctcaatagctccagagtttactcaagttgatggtagattcctt
catgcaccaaagttaaaagctgggagtggccgagatatttttgtgtctcaagggaagtgg
aacttcaacaacaacaggttcattctagctagcacggtaaaccgttgggtagttgttgat
ttttcttcacgttgtaagattccggatcttgttcgacgcctcatccaatgtggaaaagct
aagggaatgcaaatcgaccctgaagacgcggtgattggggagaaccctagaatgagacgg
gcgcctgcacaaaacagggtgaaagacatgtttgaccagataaaaagaaggtttcccaag
aagccaccagcatttctactgtgtattcttcctgagaggaagaactgcgacatttatggg
ccatggaagcgggcatgtcttgcggactttggcattgtcacacaatgcttaagtcctcct
ccagtaattaacgatcagtatgtcactaatttgctgctgaaaataaatgctaagcttggc
gggctgaactcgttgctggaaatggaagagaagcatgccatacctctcgtgtcacgggtt
ccaaccatgatccttggcatggatgtttcccatggttcaccacaacgtgatttgccatcc
gttgctgcggttgtaagttccttggattggcctctcatatcaagatacagagctcctgtc
tgcacccagtcacctaggctagagatgattgagtccttgttcaagcaagagggagataat
gatcgcggcctcattagggagctaatagaagactttggtaacagctgcagaaaattgccg
caacaaattatcattttcagggatggagtcagtgagggccagtttactcaggtgctgaac
aaggagctaccgcaaattattgaggcatgcaagtttctccaagacgattggtcccccaag
ttcatggtgatcgttgcgcagaagaatcaccacacaaggtttttcagagatagcaatgat
gggtctaatgttcctgctggtactgttgtggacaagggaatctgccaccacaggggctat
gatttctacatgtgtgctcacgccggcaggattgggacaaggccaacacattaccacgtg
ctgtatgacgagatcggcttcactcctgatgacctggaggagctcgtgcactccctctct
tatgtgtaccagaggagcacctcagccatatctgtcgttgctcctgtgtactacgcgcat
ctggcggcagcgcaggtgcggcagtttgtcaagttggatgagtcatcagagacaggatcg
tcggccagcggcggtccagcacctgtgccagagctgcctcggctgaatgaccgcgtcagg
tcctccatgttcttctgctga
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