Panicum virgatum (switchgrass): 120709849
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Entry
120709849 CDS
T07260
Name
(RefSeq) ABC transporter B family member 4-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120709849
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120709849
04147 Exosome [BR:
pvir04147
]
120709849
04090 CD molecules [BR:
pvir04090
]
120709849
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120709849
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120709849
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120709849
CD molecules [BR:
pvir04090
]
Proteins
120709849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
ABC_ATPase
AAA_29
AAA_16
RsgA_GTPase
Zeta_toxin
AAA_21
AAA
DEAD
AAA_15
AAA_24
DLIC
Motif
Other DBs
NCBI-GeneID:
120709849
NCBI-ProteinID:
XP_039851420
LinkDB
All DBs
Position
5K:31223246..31237088
Genome browser
AA seq
1260 aa
AA seq
DB search
MRGSGETAAGGRERPPPAVGKAAAVGTVPFHRLFAFADRADAALMAVGAAAAVANGMARP
LMTFIMGDVIDAFGSSTDGSSDVAHRVSKVIVNFVYLAIGAGVASTLQVSLWTIAGERQA
ARIRALYLKAILRQDIAYFDMEMSTGQVTERMAGDTFLIQDAIGEKVGRSIQLLSTFVGG
FIIAFVRGWLLALVMLSSIPPIAISFAIITKLRIRLSTHMQAKYGDAGNVVEQTLGAIRT
VVSFGGEEHAITMYNKLIRKAYESSLLEGIVTGLGLGAMELSLFCSYGLAIWYGSRLIIE
RGYNGGSVISIIMAVTIGAMCLGLAAPSVTAFAEGQGAAYRMFRTIERQPNIDIYDTAGI
VLEDIKGDVELTDVYFSYPTRSEHLVFDGFSLRVPSGTTMALVGESGCGKSTVISLVERF
YDPQAGQVLIDGVDIRRMNLGWIRGKIGLVSQEPVLFSTTIRENIAYGMENLTLEDIKEA
TELANAAKFIDNFPNGLDTMVGERGIQLSGGQKQRIAIARAIVKNPKILLLDEATSALDM
ESERVVQEALNRVMLQRTTIIVAHRLSTVKNADVISVLQNGKMVEQGSHIELMKIPEGSY
SKLIHLQDTQQEAETYHTDPRSKSFFERSVSKGSSSIGHSDRHSFSASPWIPDPTEFSPA
PNIEDDKTHKVMPNGPKKAPIARLFYLNKPEALVLALGSIIAAMHGVILPLFGTLISTAI
KTFYEPPEKLPKDSRFWASMFVALGAYSFVLNPVEYFLFGLAGGKLVERIRSLMFRSVMS
QDINWFDKPENSSGLIGARLSTNAVIVKQLVGDNLALNVQTLSTIVSGLTIAMVANWKMT
LIITVVLPLVGLQAYAQMLFLKGLNKNSKLKYEEASQVASDAVGGMRTVASFCAEKNVMK
TYEMKCESPIRQGIREGVVGGLGLGFSLAVFYFAYALCFYVGAKFVQQGKATFPEVFKVF
FVLVLGAEGISRSSAIGADSNKVNDAATSVFEILDCKSKIDYSNEEGVTIASVRGDIDFQ
NVCFSYPLRPSIQIFKDLSLSVPSGKTVALVGESGSGKSTVIALLERFYDPDSGSIFLDG
IDLQTLNVSWLRQQVGLVSQEPVLFNDTIRANIAYGRQGEASEEEIIAAAEAANAHEYIS
ALPDGYNTIVGERGIQLSGGQKQRVAIARAIIKNPKVLLLDEATSALDVESERVVQEALD
NVVIGRTTVVVAHRLSTIRGADIITVLKNGTVVEKGSHGDLMQIKDGIYASLVELSSSSQ
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atgagagggagcggcgagacagcggccggcggccgtgagaggccgccgccggcggtgggc
aaggcggccgccgtcgggaccgtgccgtttcaccggctgttcgcgttcgcggacagggcg
gacgccgcgctcatggccgtgggcgcggccgcggcggtggccaacgggatggcgcggccg
ctcatgaccttcatcatgggcgacgtcatcgacgccttcggctcctccactgatggctcc
tccgacgtcgcgcacagggtctctaaggtgatcgtgaactttgtctatcttgccattggg
gcaggagttgcttcaacacttcaggtatcattgtggacaattgctggagaaagacaagca
gcccgaatcagagccctgtatctcaaggctattctaagacaagacattgcatattttgac
atggaaatgagcactgggcaagtgactgaaaggatggcaggtgacacatttctcattcaa
gatgccataggagagaaggttggaaggtccatacaactcctttctacttttgttggtggc
ttcattatagcatttgtgagaggatggctcttggctcttgttatgctctcaagcattcct
ccgattgctatttcctttgcaatcataactaagttgaggataagactctccacccacatg
caagcaaaatatggtgatgctggaaatgttgtagaacaaactcttggggccatcagaacg
gtagtttcgttcggtggtgaggaacatgctataacaatgtataacaagttaataagaaaa
gcgtatgaatcctcattattggaaggtattgtaacgggacttggactgggtgccatggag
ctatccttgttttgcagttatggattagcaatctggtatggatcaagattgataattgag
cgtggatataatggaggctcagttatttcgattataatggctgtcacgatcggtgcaatg
tgcttaggtttggcagcaccatcagtgactgctttcgcagaaggtcaaggagcagcatat
agaatgttcaggacaattgaacgacagccaaatattgacatatatgataccgcgggcatc
gttttggaggacatcaagggtgatgttgaattgacggatgtttacttcagctatcctacc
agatctgaacatttggtatttgacggattttcattgcgagtaccaagtggcactactatg
gccctagttggagagagtggctgtgggaagtcgaccgtgatcagtttagtggagagattc
tacgatccacaggctggacaagtcttgattgatggagttgacattagaagaatgaatctt
gggtggataagaggaaaaattggtcttgttagccaagaaccagtgttgttctcaactacg
atcagggagaacattgcatacgggatggaaaatctaacacttgaagacatcaaggaagct
accgagcttgcgaatgcagccaaattcattgataactttccaaatggtcttgacacaatg
gttggtgaacgtggaattcaactatctggaggccaaaaacaaagaatagcaattgccaga
gcaatcgtgaagaaccctaagatcttactacttgatgaagcaactagtgcattggatatg
gaatcagagagggtagtacaagaagctttgaatagggtaatgttacaaaggactacaatt
attgttgctcatcgtctcagcacagtgaagaatgctgatgtgatatcagtcctacaaaat
gggaagatggtcgaacaaggttcacatatagagttgatgaagatacctgaaggttcttac
tctaagctaattcatctacaagacactcagcaagaggcagaaacttatcatactgatcca
agaagcaaaagtttctttgagagatcagttagtaaaggttcatcttctattgggcatagt
gataggcactctttctctgcctcaccttggatacctgacccaacagagtttagtcctgct
ccgaatatagaggatgacaagacacataaagtgatgccaaatggtccaaagaaagctcca
attgctaggcttttctatttgaacaaaccagaagctttagttcttgcacttggttctatt
attgctgcaatgcatggagtcattttgccattatttggcacactgatttcaactgcaata
aagacattttatgagccaccagaaaaactaccaaaggactccaggttctgggctagcatg
ttcgttgcactaggcgcttatagttttgttctgaatccagtagagtatttcctatttgga
ttagcaggtgggaagcttgtggagcgcataagatcattgatgtttcgaagtgtaatgagc
caagacatcaattggtttgataaacctgagaactcaagtggattgataggtgccaggcta
tcgaccaatgctgttattgtgaaacaactagttggtgataacttagcacttaatgtgcag
actttatcaactattgtatcaggcctcacaatagcaatggtggcaaattggaagatgaca
ctgattataacagttgtgctgcccttagtcggtttgcaagcctatgctcagatgttgttt
cttaaaggtctcaataaaaattcaaagttgaagtatgaagaagcaagtcaagtagcaagt
gatgcagttggcggcatgagaactgtggcatcattttgtgccgaaaagaatgtgatgaaa
acatatgagatgaaatgtgaatctccaataaggcaaggaataagggaaggtgttgttggt
ggcttgggacttggcttctcattagctgtattctactttgcgtatgctctctgtttctac
gttggtgcaaagtttgttcagcaaggaaaggcaacatttcctgaagtatttaaggtgttt
tttgtattagttctgggagctgaaggaatctcccgatcaagcgcaataggtgcagacagt
aataaggttaatgatgcagccacctctgtctttgaaattcttgattgtaaatccaagatt
gattacagcaacgaggagggtgtgaccattgcaagcgtgaggggtgacattgatttccag
aatgtatgctttagttatccactgcgaccaagtattcaaatattcaaggatctatcactg
agtgttccttccggaaagactgttgcactcgttggggagagtggaagtgggaagtccacg
gtgattgcactgcttgagaggttctatgacccggattccggtagcatttttcttgacggc
attgatcttcagaccctcaatgtaagctggcttcggcagcaagtggggctggtttcccaa
gaaccagtactgtttaatgacaccatccgcgccaacattgcttatgggaggcaaggggag
gcttccgaagaagaaatcattgctgctgctgaagcagccaatgcacatgagtacatctcc
gcccttcctgatgggtacaacaccatcgtcggcgagagagggatccagttgtcaggtggg
cagaagcagcgtgttgccatcgctagggccattataaagaatcccaaggtgttgctgctc
gatgaggcaacgagtgcactggatgtggagtcggagcgagtggtgcaagaggctctagac
aatgtggtcattggtcggacgactgtggtggtggcacatcgcttatcgacaattagaggc
gcggatatcatcactgtcttgaagaacgggacagtagtcgagaaagggagccatggtgac
ctaatgcagataaaggatggcatctatgcttcacttgttgagctcagctctagttctcaa
taa
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