Panicum virgatum (switchgrass): 120709882
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Entry
120709882 CDS
T07260
Name
(RefSeq) heat stress transcription factor A-6a-like
KO
K09419
heat shock transcription factor, other eukaryote
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120709882
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Heat shock factors
120709882
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GFIT
Motif
Pfam:
HSF_DNA-bind
Motif
Other DBs
NCBI-GeneID:
120709882
NCBI-ProteinID:
XP_039851451
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Position
5K:35597809..35601134
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AA seq
417 aa
AA seq
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MAAGRFRLFKMPKPQHLTPHRPLRSQRAASSSSSSPLAPRPSGSGGSKPGTTRASGGTLG
LRLGLGGEAMAARAPAAVKREPKPEPWAAEPESGPAVVLPRPVEGPPMPAPFVSKTYEMV
ADAATDAVVSWAPGGAGNSFVVWDPQALAVGILPRFFKHANFASFIRQLNIYGFRKVNPD
RWEFAHESFLSGQKHLLRNIKRRRAPKPQMEAQPANGASICFGQPKDSSEVERLKRDRAA
LRAEVLTLKQQYISCKSQLIALEDRILKNERNQQHVVAFFAKVLSNPAFVQQFLLKYAVN
KELCSTVKRQRLTENEEQHVDTPLKNGKEPALATDGNASAASSEGGAVPKHEPMAEWNNQ
EMDNIWDDVWDDLDAIPGAEMDQEDKAAARFEEFMGRPCGWVDDCPYLVEQMQFVEH
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggctgctggtcgcttccgcttgtttaaaatgccgaaaccccaacacctcacaccgcac
cgccctctgcgcagccagagggccgcctcctcttcctcctcgtccccgctcgcccccagg
ccaagcggtagcggcggctccaagcccgggacgacgcgcgccagcggcggcacgctcggg
ctccggctcgggctcggaggcgaagcaatggcggcgcgggcccccgcggcggtgaagcgg
gagccgaagccggagccgtgggcggcggaaccggagtcggggccggcggtggtgctgccg
cggccggtggagggcccgccgatgcccgcgccgttcgtgtcgaagacgtacgagatggtg
gcggacgcggccacggacgcggtggtgtcgtgggcacccggcggcgcggggaacagcttc
gtggtgtgggacccgcaggcgctcgccgtcggcatcctcccccgcttcttcaagcacgcc
aacttcgcctccttcatcaggcagctcaacatctacggattcaggaaggtgaatccagat
cgttgggagtttgcacacgaatctttcttatcaggccagaagcatttgctgagaaacatc
aagagacggcgcgctcccaagcctcagatggaagcacagccagctaatggagcaagcatt
tgtttcggacagcccaaggattccagcgaggttgagaggttgaagagagatcgtgctgcc
ctcagagccgaagtcctcacgctgaagcagcagtacatcagctgtaaatctcaactcatt
gccttggaggataggatcctgaagaacgagaggaatcagcagcacgtcgtcgccttcttc
gcaaaggtgctcagcaacccagctttcgtgcagcagttcctgctcaaatatgctgtgaac
aaagagttgtgtagcactgtgaaaaggcagcggctgacggaaaatgaagagcagcatgtt
gatacgccactgaagaatggtaaggaacctgcattggctacagatggtaatgcttctgct
gctagcagtgagggtggtgcagttccaaaacatgagcccatggccgagtggaataatcag
gagatggacaacatttgggatgatgtgtgggacgacctggacgccatacctggtgctgaa
atggaccaagaagacaaggctgcagcaaggttcgaggagttcatgggacggccttgtggt
tgggttgatgactgcccatatctggtggagcaaatgcagtttgtggagcactag
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