Panicum virgatum (switchgrass): 120710073
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Entry
120710073 CDS
T07260
Name
(RefSeq) F-box/LRR-repeat protein 20-like
KO
K10268
F-box and leucine-rich repeat protein 2/20
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120710073
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120710073
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GFIT
Motif
Pfam:
LRR_6
LRR_FBXL15
LRR_4
LRR_SKP2
LRR_RPS2
LRR_At1g61320_AtMIF1
LRR_At5g56370
LRR_14
F-box_5
F-box
DUF8380
F-box-like
Motif
Other DBs
NCBI-GeneID:
120710073
NCBI-ProteinID:
XP_039851657
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Position
1K:complement(43052482..43055214)
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AA seq
417 aa
AA seq
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MSAPPSGGGGALINEVLTDDELRAVLSRLGPEAERDAFGLVCRRWLRIQSSERRRLRARA
GPDMLRRLAARFPGALELDLSQSPSRSFYPGVIDDDLDVIASSFRNLRVLALQNCKGISD
VGIAKLGDGLPFLQSVDVSRCIKLSDKGLKAVALGCQKLRQLHITGCRLITDNLLLSLSK
SCLQLENLGAAGCNSITDTGISALADGCHHIKFLDISKCNKVGDPGVCKIAEVSSSHLVS
IKLLDCSKVGDKSIYSLAKCCSNLETLVIGGCRNISDASMQALALACSSSLRSLRMDWCL
KITDTSLRSLLSNCELLVAIDVGCCDQITDVAFQDGEGNGFRSELKVLKISSCVRLTVAG
VSSVIKSFKALEYLDIRSCPQVTRDSCEQAGIQFPSACKVNFYGSLLESDPSAERFF
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgccaccgtcgggcggcggcggcgccctcatcaacgaggtgctcaccgacgac
gagctccgcgcggtgctctcccgtctggggcccgaggcggagcgcgacgccttcgggctc
gtgtgccgccgatggctccggatccagagctccgagcggcggcgcctgcgcgcgcgcgcc
ggcccggacatgctgcgccgcctcgccgcgcgcttcccgggagccctcgagctcgacctc
tcccagtccccctcccgctccttctaccccggggtcatcgacgacgacctcgacgtcatc
gccagcagcttccgcaacctgcgtgtcctcgcgctgcagaattgcaaaggtatctctgat
gttggaattgccaaattgggagatggactgccatttctgcagtctgttgatgtttctcgc
tgcataaagctgagtgataaaggtttgaaggcagttgcactggggtgccagaaattgagg
cagctgcatatcacaggatgcagattaataactgataatttattgctttctctatcaaag
agctgtctacaattggaaaatcttggagcagcaggatgtaacagcataacagatactggt
atatctgctctagctgatggctgtcatcatataaaattccttgacattagtaaatgtaat
aaagttggtgatcctggagtctgtaaaattgctgaggtttcttcatcacacttggtgtca
ataaagctattggactgcagcaaggtgggagataagtccatctattcattagctaagtgc
tgcagtaacctagagactcttgtcattggtggatgtcggaacattagcgatgcatccatg
caagctcttgctcttgcctgctccagcagcttaaggagcctgagaatggactggtgcctg
aaaataacagacacgtcattgcgaagtctgctgtctaactgtgaacttcttgtggcgatt
gatgttggatgctgtgaccagataaccgacgttgcatttcaggacggggaaggaaatggg
tttcggtctgaactgaaagttttgaagatcagcagctgtgttcggctcacagttgcaggg
gtcagcagtgtgattaaatccttcaaggctcttgagtacctggacattcggtcttgtcct
caggttacaagggacagctgcgagcaagctggaatacagtttcctagtgcatgtaaggtg
aatttctatggaagcttgctggagtctgatccatctgctgagaggttcttctaa
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