KEGG   Panicum virgatum (switchgrass): 120710113
Entry
120710113         CDS       T07260                                 
Name
(RefSeq) splicing factor U2af small subunit B-like
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120710113
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120710113
Spliceosome [BR:pvir03041]
 Complex A
  U2 snRNP components
   U2 related factors
    120710113
 Complex B
    120710113
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4 Torus zf-CCCH_4
Other DBs
NCBI-GeneID: 120710113
NCBI-ProteinID: XP_039851714
LinkDB
Position
5K:complement(43138266..43142046)
AA seq 296 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLVLVNMYQRPDMITP
GVDAQGQPIDPRKMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFREED
QAAAAHTALQGRFYSGRPIVVDFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGRDL
RKKLFGHYRRPNRGRSRSPSPHHRRERRDRDDYRGGGGRGRDDYHGGGGRGRDDYHGGGG
GRRGGGSRSERYDDGGRRRHDGSPPPRRARSPVRESSEERRAKIEQWNREREEKQG
NT seq 891 nt   +upstreamnt  +downstreamnt
atggcggagcacttggcttcgatatttggtacagagaaagacagagtcaattgcccattt
tacttcaagattggggcttgccgtcatggtgatcgttgctcccgtctccataacaggcca
accatatcaccgactcttgtgctggttaacatgtatcaacgccctgacatgatcacccct
ggggttgatgctcaaggccagccaattgatcctcgcaagatgcaggagcattttgaagat
ttttatgaggatatctttgaagaactgagcaaatttggtgagattgagaacctcaatgta
tgcgacaaccttgctgatcacatgataggcaatgtctatgtccaattcagggaggaagat
caggcagctgcagctcatacagcccttcaaggccgcttttactctggtcgcccaattgtt
gttgacttctccccggttactgactttcgtgaagcaacctgcagacagtatgaggagaac
agctgcaatcgtggcggatattgcaattttatgcatgtgaagaagattggtagggatctg
aggaaaaagctctttgggcattacaggagaccaaacaggggaaggagccgcagccctagc
ccacatcacaggagggagcgtcgtgaccgagatgattaccgtggcggcggtggccgtggc
cgtgatgactaccatggtggcggtggtcgtggccgtgatgactaccatggtggcggcggt
gggcgcaggggtggaggcagcaggtctgaaaggtacgatgatggagggaggcgcaggcat
gatggcagcccccctcccaggcgtgcaagaagccctgtcagggagagcagtgaggagcgc
agggctaagattgagcagtggaaccgtgagagggaggaaaaacaagggtga

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