Panicum virgatum (switchgrass): 120710187
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Entry
120710187 CDS
T07260
Name
(RefSeq) pentatricopeptide repeat-containing protein At5g48910-like
KO
K01455
formamidase [EC:
3.5.1.49
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00460
Cyanoamino acid metabolism
pvir00630
Glyoxylate and dicarboxylate metabolism
pvir00910
Nitrogen metabolism
pvir01100
Metabolic pathways
pvir01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
120710187
09102 Energy metabolism
00910 Nitrogen metabolism
120710187
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
120710187
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.49 formamidase
120710187
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Gene cluster
GFIT
Motif
Pfam:
FmdA_AmdA
PPR_2
PPR
PPR_1
PPR_3
E_motif
PPR_long
TPR_17
TPR_19
Motif
Other DBs
NCBI-GeneID:
120710187
NCBI-ProteinID:
XP_039851775
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All DBs
Position
5K:complement(49547097..49553345)
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AA seq
967 aa
AA seq
DB search
MAEPAGLPPPLRPSSAPSPPAVARALHAINTCTSPAALGPMRGGILRDPALLRSTTVVSA
FFLACGRLRSLDPALALFASLPRPHVFVFNSLLRSLPPAPACSPLPLFRRFLGLGVRPNR
YTFPLILTSLFSLRDLTVVHSQVAKSGFARGAHVQNVLLARYAACDPVLAHAEKLFDEMP
CPDVVAWTTVITAYRNRGRSFQALSAFRRMSAASVAPNRVTMVSALGACAAHGAINTGVW
IHRYVQKQGWELDVVLGTALVDMYGKCGHIAEGVRVFSEMAERNVYTWNSIIGALALAQD
GETALQWFFQMEADGVRPDAVTLICVLCACAHAGFVDIGKKIFNLIVQGKYGFRPGIKHF
GCMVDLLSRSGHLDDAFRLVETMPSQPNAAIWGLLLRGCKAHGDAVLSEHVTMRLVELEP
ENASHYVLLANLYAGTGRWLEAEEVLKWMKKKGLVKDAGWSLKMLEDSSSTYISDGDLME
CALHDSSICISYHHKGAQSFQLGEALEEILLRNMAPLTPRVVVPIDVKKQPWEQKIPLHN
RWHPDIPPVADVTEGELFRVEMVDWTGGRVRDDNSADDIKFLDLTITHYLSGPLRIVDSE
GLPASPGDLLAVEICNLGPLPGDEWGYTAIFEMENGGGFLTDHFPSARKAIWYFEGIYAY
SPQIPGVRFPGLTHPGIVGTAPSVELLNIWNEREKKLAETSPETLKVCEVLHQRPLANLP
TPENCLLGKIQKETAVWHKVANEAARTIPGRENGGNCDIKNLSRGSKVYLPVFVEGANLS
TGDMHFSQGDGEVSFCGAIEMSGFLELKCEIIRGGMKEYLTPVGPTPLHVNPIFEIGPVE
PRFSEWLVFEGISVDESGKQHFLDASVAYKRAVLNAIEYLSKFGYSKEQVYLLLSCCPCE
GRISGIVDSPNAVATLAIPTAIFDQDIRPKHLRGRPGPKLIRLPDLLSCSTDGHLPVIQD
QSGRSEP
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcccgccggcctgccgccgccgctccgcccgtccagcgcgccgtctccaccg
gccgtcgcgcgcgcgctgcacgcgatcaacacctgcacctcccccgcggccctcgggcct
atgcgcggcggcatcctccgcgaccccgcgctcctccgcagcacgaccgtcgtctccgcc
tttttcctcgcctgcggccgcctccgcagcctcgaccccgcgctcgccctcttcgcctcg
ctcccgcgcccccacgtcttcgtcttcaactcactcctccgctccctgcccccggcccct
gcctgctcgccgctcccgctcttccgccgcttcctcggcctcggcgtccgccccaaccgc
tacaccttcccgctcatcctcacctccctcttctcgctccgagacctcacggtcgtgcac
tcccaggtggccaagtccggcttcgcgcgcggcgcccacgtccagaatgtccttcttgcg
cgctacgcggcctgcgaccccgtcctggcgcacgccgagaagctgttcgacgaaatgcca
tgtccggacgtggtcgcgtggacgacggtgatcaccgcgtacaggaaccgtggccgcagc
ttccaggctctgtccgccttccggcggatgtctgctgcttctgttgcccccaaccgcgtg
accatggtttctgcgcttggtgcctgtgcggcacatggtgccatcaacaccggcgtctgg
atccatcggtacgtgcagaagcagggatgggaactggacgtggtattaggcaccgcgctt
gttgacatgtacgggaagtgtggacacattgcagaaggagtacgtgtgttctctgaaatg
gccgagaggaatgtctatacttggaactctatcattggggcacttgctctggcacaggat
ggagaaacagctctgcaatggttcttccagatggaagctgatggtgtacgaccagatgcc
gtcacactgatttgtgttctctgtgcatgtgcgcatgctgggtttgttgatattgggaag
aaaatatttaacttaattgttcaaggtaagtatggatttcgacctgggatcaagcacttt
ggatgcatggttgaccttcttagccgctctggacacctggatgatgccttcaggcttgtt
gagacaatgccatcacagccaaatgctgccatctggggcttgctattgcgtggttgcaag
gcccatggtgacgcagtattgagtgaacatgtgacaatgcggctggtagagctggagcct
gagaatgcatcacattatgtgctgctagccaacttgtatgctgggacagggaggtggctg
gaggcagaagaggtcttgaagtggatgaagaaaaaaggattggtaaaggatgctggctgg
agccttaagatgttagaggacagctcaagcacatatataagtgatggagatttgatggaa
tgcgcactccatgactcatcaatatgtatatcttaccatcataaaggtgcacaaagcttc
caactgggcgaagctcttgaggagatactgttacgaaacatggctcctctgactccaaga
gtggtagtgcccatagatgtgaaaaagcagccatgggagcaaaagattcctctccataac
cgctggcatccagatatccctcctgttgctgatgtaactgaaggagaattgttccgcgtt
gagatggttgattggactggagggcgggttagggatgacaactctgcagatgatatcaaa
ttccttgatctcacaattactcattatcttagtgggcccctaagaatagttgattctgaa
gggcttccagcttcacctggtgatcttcttgcagtagagatctgcaaccttggtccactt
cctggtgatgagtggggttatactgcaatatttgaaatggagaatggaggtggattctta
actgaccactttcctagcgcaagaaaggccatttggtattttgaaggaatttatgcatat
tcccctcagataccaggtgttcgttttccaggattaactcatcctggtatagtaggaact
gcaccatctgttgaacttcttaatatatggaatgaaagggagaaaaagttggctgagaca
agtccagagactcttaaagtgtgtgaagttctacaccaaaggccccttgctaatttaccg
acccctgagaactgcttacttggaaagattcagaaagagacagctgtatggcacaaagtg
gcgaatgaagcagccagaactattcctggaagggagaatggtgggaattgtgacataaag
aatctaagcagaggttccaaagtttatctaccagtatttgttgaaggagcaaatcttagt
actggtgatatgcacttctcccagggcgatggtgaagtgtcattttgtggtgcaattgaa
atgagcggattccttgagctcaagtgtgagatcataagaggtgggatgaaagaatacttg
accccagttggtccaacaccactacatgtgaatcctatctttgagataggtcctgtcgag
ccacgtttctcagagtggttagtatttgagggcatcagtgtggatgagtctgggaagcag
catttccttgacgcatcagttgcctacaaacgtgcagttctgaatgccatcgagtacctt
tccaaatttgggtactccaaggagcaggtatatctcttactatcatgctgtccatgtgag
ggtaggatatccggaatagtagattctcctaatgcagtggcaactcttgccattcctaca
gcaatattcgaccaggatataaggccaaaacacctgagagggagaccaggaccaaaattg
ataagacttccagatcttctgagctgctcaactgatggacaccttcctgtcatccaagac
caaagtggtagaagtgaaccctag
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