Panicum virgatum (switchgrass): 120710484
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Entry
120710484 CDS
T07260
Name
(RefSeq) putative E3 ubiquitin-protein ligase SINA-like 6
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120710484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120710484
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120710484
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120710484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_RING
Sina_ZnF
zf-RING_UBOX
Trm112p
DHODB_Fe-S_bind
Motif
Other DBs
NCBI-GeneID:
120710484
NCBI-ProteinID:
XP_039852096
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All DBs
Position
5K:complement(9034648..9037062)
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AA seq
307 aa
AA seq
DB search
MEHPYFPQNLLFRVPPMQSARREAEDEAAKKAMAPQEPEEGERGGVVKRRKAAEATDVTM
ELGILDCPVCYHPLQPPIFQCAVGHVVCSSCLAKLTDRCHSYSITTGYNRCHIIEHVVDS
TKVSCFYGDLGCTEKITYYEKEDNEKVCPHGPCFWPETDCSFRGSTVMLHEHFASVHKWH
CVRLSYNKAYRFRIAQGSTVLQGEDGHLFLVNMVLEPVGGLISLFSVQPNINESKYMCKL
AISSPELSYYQVSQFQTRSTNLFDGLPKDCFLFVVPKVLLRDTGTNATASVSVTLTHHKC
HAQVTAY
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atggagcacccctattttccccagaatctgctgtttagggtcccccccatgcagtctgcc
cgaagggaggcggaagacgaagccgcgaagaaagcaatggcgccgcaggagccggaagaa
ggcgagcgcggcggcgtcgtgaagcggaggaaggccgccgaggccaccgacgtgaccatg
gagctcggcatcctcgactgccccgtctgctaccaccccctgcagcctccgattttccag
tgtgctgtggggcatgtcgtatgctcatcttgtcttgccaagctcacggacaggtgccac
tcctactccatcaccacaggctacaatcggtgccacattattgagcatgttgtcgactcc
actaaagtttcttgcttctatggggaccttggatgcactgaaaagataacctactacgag
aaagaagacaatgagaaagtgtgccctcatgggccgtgcttctggcctgaaaccgactgc
tccttccgcggatcaactgtgatgctccatgagcattttgcttcggttcacaagtggcat
tgcgtcaggctttcctacaacaaggcataccgattccgcattgcccagggttcaactgtc
ctccagggtgaagatgggcacctgttcttggttaacatggtactggagcccgttgggggt
ctcatctcacttttcagcgtccagcctaacatcaatgaatcaaaatacatgtgcaaactg
gcaatctcatctcctgaattgagctactatcaggttagtcagttccaaacgagaagcact
aatctgtttgatgggctaccgaaggattgcttcctgtttgttgtgccaaaggtgctgctc
cgagataccggtacaaatgccacagccagtgtgagtgtgacactcacccaccataagtgt
catgcacaggttacagcttattga
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