Panicum virgatum (switchgrass): 120710489
Help
Entry
120710489 CDS
T07260
Name
(RefSeq) putative E3 ubiquitin-protein ligase SINA-like 6
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120710489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120710489
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120710489
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120710489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_ZnF
Sina_RING
Motif
Other DBs
NCBI-GeneID:
120710489
NCBI-ProteinID:
XP_039852098
LinkDB
All DBs
Position
5K:complement(9235533..9236846)
Genome browser
AA seq
276 aa
AA seq
DB search
MEDEPQVKLRFGLSLFHCRACLRPLRPPTAKCSAGHVVCDACRGSHAPECAGAAAFVPSL
DVDVYVRGARLACPNAEFGCESCCVYYQARDHERACQWAPCYCPEPGCNASDSPARLAAH
FAATHAWPVTDVSYAKVHRIALPRGSALHLLVSREDSQVFVVSSSALGAGAGAAAAAAAA
AALACVRANGDAVAGAPRFRCTLWVQDARGGGNVARVTFEVPSSDLSRGFVAAEQGMFLA
VPPELLRDAPGEAPDLMVRIDKAASAAANSPITPPA
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgagccgcaggtcaagctgcggttcggcttgtccttgttccactgccgcgct
tgcctccgccccctcaggcctcccacggccaagtgcagcgccgggcacgtcgtctgcgac
gcctgccgcggcagccacgctccggagtgtgccggcgccgccgccttcgtccccagcctc
gacgtggacgtctacgtgcgcggcgccaggctggcgtgccccaatgcggagttcggctgc
gagagctgctgcgtctactaccaagcccgcgaccacgagcgcgcgtgccagtgggcgccc
tgctactgcccggaaccgggctgcaacgcctccgactcgccggcgaggctggccgcccac
ttcgccgccacccacgcctggcccgtcaccgacgtgagctacgcgaaggtgcacaggatc
gccctgccgcgggggtcggccctgcacctcctcgtgagcagggaggactcgcaggtgttc
gtcgtgtcctcgtccgcgctcggcgccggcgccggcgcggcggcggcggcggcggcggcg
gcggcgctggcgtgcgtgcgggcgaacggcgacgcggtggcgggggcgccgcggttccgg
tgcacgctctgggtgcaggacgcgcgcggcggcgggaacgtggcgagggtcacgttcgag
gtgccgagcagcgacctgtcccgcgggttcgtggccgcggagcagggcatgttcctggcc
gtgccgccggagctgctgcgcgacgcgcccggcgaggcgccggacctcatggtccgcatc
gacaaggctgcgtccgccgctgcgaactcccccatcactccaccagcttag
DBGET
integrated database retrieval system
