Panicum virgatum (switchgrass): 120710512
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Entry
120710512 CDS
T07260
Name
(RefSeq) geranylgeranyl pyrophosphate synthase 7, chloroplastic-like
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120710512
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120710512
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
120710512
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
120710512
2.5.1.29 geranylgeranyl diphosphate synthase
120710512
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
120710512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
UbiA
Motif
Other DBs
NCBI-GeneID:
120710512
NCBI-ProteinID:
XP_039852115
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All DBs
Position
5K:11663342..11666022
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AA seq
354 aa
AA seq
DB search
MDKLASSCFVQHGAPSQSLKLYGLQRPSTSLLTSGRRSVPILRCAAAAKETSVDDINGGD
GFDFHCYLSANAKAVHDALDVALWGLRCPASLSASMRHSILAGGKRIRPVLAIAACQLVG
GAAAAATPVACAVEMIHTASFIHDDMPCMDDDALRRGRPSNHVVFGEATALLAGDALLAL
AFEHVARGSTAAGVPADRTLRAVLELGSAGGPGGIAAGQVADMQGEGDPSARLPAMKYIL
VHKAARLVEAAAVSGAVVGGAGDADAERVRRYAHFLGILGQVVDDVLDVTATSEQLGKTA
GKDAAAGKATYPRLLGLEGARAYAGELLAKAEAELDGFDAAPGSIWLYGLSCGL
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atggacaagttggcatccagctgcttcgtccagcacggagcaccgtcccaaagcttgaag
ctctacggtcttcagagaccatccacttcgcttctcacgtccggcaggcgatccgttccc
atcctccggtgcgccgcggccgccaaagaaacgagcgtcgacgacatcaatggcggcgac
ggcttcgacttccattgctacctgtcggccaacgccaaggcggtgcacgacgcgctggac
gtagccctgtggggcctccggtgccccgcgtccctgagcgcgtccatgcgccactccatc
ctcgcgggcggcaagcgcatccgcccggtgctggccatcgccgcgtgccagctcgtgggc
ggggcggcagccgcggcgacccccgtggcctgcgccgtcgagatgatccacaccgcgtcg
ttcatccacgacgacatgccgtgcatggacgacgacgcgctccggcgcggccggccctcg
aaccacgtcgtcttcggcgaggccacggcgctgctggcgggggacgcgctcctggctctc
gcgttcgagcacgtggcccggggcagcacggccgccggcgtccccgcggaccgtaccctc
cgcgcagtcctggagctcgggagcgccggcggcccgggcggcatcgcggcggggcaggtc
gcggacatgcagggcgagggggacccctccgcgcgcctccccgcgatgaagtacatcctc
gtacacaaggcggcgcggctggtggaggccgcggcggtgtcgggcgccgtcgtcggggga
gccggggacgccgacgccgagcgcgtccgccgctacgcgcacttcctgggcatcctgggc
caggtggtggacgacgtgctggacgtgacggccacgtcggagcagctcgggaagacggcg
ggcaaggacgcggccgccgggaaggccacgtacccgcggctgctgggcctggagggcgcg
cgcgcgtacgcgggcgagctcctcgccaaggccgaggcggagctcgacgggttcgacgcc
gcgcccggttccatatggctctatgggctttcatgtggactgtag
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