Panicum virgatum (switchgrass): 120710526
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Entry
120710526 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120710526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120710526
03036 Chromosome and associated proteins [BR:
pvir03036
]
120710526
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120710526
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120710526
mRNA degradation factors
5'-3' decay
Decapping complex
120710526
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120710526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
TFIIA
Motif
Other DBs
NCBI-GeneID:
120710526
NCBI-ProteinID:
XP_039852127
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All DBs
Position
1K:43491376..43497936
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AA seq
515 aa
AA seq
DB search
MDPRARYPPGMGNGRGGNPNYYGRGPPPQQPHQHNHQHQQTSGAHHHQQYAQRQQQQHNL
NHPQQQQQHHNHHQQQQQWLRRNQIARRPAGAAGTSEPKALVPSTAADGVDSSSQDWKAQ
LKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSN
ILARAKNGTGKTAAFCIPALEKIDQDNNAIQVVILVPTRELALQTSQVCKELGKHLKIQV
MVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLTKKGVCILKDCSILIMDEADKLLSPEF
QPSVEQLIRYLPASRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFV
EERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRV
FHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVN
LITYEDRFNLYRIEQELGTEIKPIPPQIDQAIYCQ
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgcgccaggtaccctccgggcatgggcaacggccgcggcgggaaccccaac
tactacggccgcggaccgccgccgcaacagccgcaccagcacaaccaccagcaccagcag
acgtcgggggcgcatcaccaccagcagtacgcgcagaggcagcagcagcagcacaacctc
aaccacccccagcaacagcagcaacaccacaatcaccaccaacaacagcagcagtggctg
cggcggaaccagatcgcccgcaggcccgcgggcgcggccggtaccagcgagccgaaggcc
ctggtgccatccacggccgccgatggcgtggattcgagttcacaagattggaaggctcaa
ttgaagctgccgcctcaagatacacgctacaggacagaggatgttacagccactaaggga
aatgagtttgaagactactttctcaagcgtgaactcttgatggggatatatgagaaggga
tttgaaagaccctctcctatccaagaagaaagcattcctattgctttaactggtagtaac
attcttgcaagagcgaagaatggaactggcaagactgctgcgttttgtattcctgctctg
gaaaagattgatcaagataataatgctattcaagttgttatattggttcccacaagggaa
ttggctctacagacatcacaagtttgcaaggagctcggtaaacatttgaagattcaagtt
atggttaccactggtggaaccagcttgaaggatgatattgttcgtctgtaccaacctgta
catttacttgttggaacacctgggcgtattttggatcttacaaagaaaggtgtttgcatt
ttgaaggactgttcgatacttattatggatgaggcagacaagcttctctctcctgagttt
caaccttctgtggaacagttgattcgctacctccctgctagtcgacagattttgatgttc
tcagcaacatttcctgtgactgttaaggagttcaaggacaaatatctgcctaaaccttac
gtgattaaccttatggatgagcttacactgaagggaattacacagttctacgcgtttgtt
gaagaaagacagaaagttcactgtcttaacacccttttttccaagcttcaaatcaaccag
tcaataatattctgtaactctgtcaatcgtgttgaactattggcgaagaagatcacagaa
cttggttattcttgcttctatattcatgcgaagatgctgcaagaccatcgtaatagagtt
ttccatgatttccgtaacggggcgtgcaggaaccttgtttgtactgatctttttacaagg
ggaatagatattcaagctgtcaatgtcgttatcaattttgatttcccgaagaactctgaa
acatatctccacagggttggtagatctgggaggtttggacaccttggtctggctgtgaat
ttgatcacctatgaggatcggtttaacttgtataggattgaacaagagctcgggactgaa
ataaaaccaattcctcctcagatagaccaggctatatattgccaataa
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