Panicum virgatum (switchgrass): 120710538
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Entry
120710538 CDS
T07260
Name
(RefSeq) transcription factor LAF1-like
KO
K09422
transcription factor MYB, plant
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120710538
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
120710538
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GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
120710538
NCBI-ProteinID:
XP_039852136
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Position
1K:43485480..43488521
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AA seq
305 aa
AA seq
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MVCKACDKPKPNYRKGLWSPEEDEKLRDYILRHGHGCWSALPAKAGLHRNGKSCRLRWIN
YLRPGLKHGMFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEAG
AKEGPGTPAPPATSSGAGDTEDSRQSAKPGEDGAAAADGPADSGGSSEPRESSSADSSCL
TGPPAAACRPHAPPVAPKVMFADWLDMDVVDCLGGGPGAAAPGLDAASAGAVGASDQHHR
QVMSQGSVQVDGPCGVDVSLHGFGDSGASCWEFQEHFDGIGIGIDQMSTTGFCDLLSMSD
YFGLN
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggtgtgcaaggcgtgtgacaagcccaagcccaactaccgcaagggcctgtggtcgccg
gaggaggacgagaagctccgcgactatatcctccgccacggccacggctgctggagcgcg
ctccccgccaaagccgggctccaccggaacggcaagagctgcaggctgcggtggatcaac
tacctgcggccggggctgaagcacggcatgttctcgccggaggaggaggagacggtgatg
agcctccacgccacgctcggcaacaagtggtcgaggatcgcacggcacctgcctggcagg
accgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgaggcaggc
gccaaggagggcccgggcacgcccgcgccgcccgcgaccagctccggcgccggcgacacg
gaggactcgcgtcagagcgccaagcccggggaagacggcgcggcggcggccgacgggccg
gcggactccggcggctcgtcggagccgcgcgagtcgtcgtcggccgactcgagctgcctc
acgggcccgcccgccgccgcctgcaggccccacgcgccgcccgtggcgcccaaggtgatg
ttcgcggactggctggacatggatgtggtggactgcctcggcggtggcccgggcgcggca
gcacctggtctggacgctgcttccgcgggcgcggttggtgcgagcgaccagcaccaccgc
caggtgatgagccaggggtccgtgcaggtggacggcccgtgcggtgtcgatgtgtccctg
cacggcttcggcgacagcggcgccagctgctgggagttccaggagcacttcgacggcatc
ggcatcggcatcgatcagatgagcaccaccggcttctgcgacctgctctccatgagcgac
tacttcgggctcaactag
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