Panicum virgatum (switchgrass): 120710582
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Entry
120710582 CDS
T07260
Name
(RefSeq) ubiquitin recognition factor in ER-associated degradation protein 1-like
KO
K14016
ubiquitin fusion degradation protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120710582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120710582
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
120710582
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UFD1_N1
UFD1_N2
Zona_CL2
CDC48_N
Motif
Other DBs
NCBI-GeneID:
120710582
NCBI-ProteinID:
XP_039852159
LinkDB
All DBs
Position
5K:complement(19654535..19655783)
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AA seq
328 aa
AA seq
DB search
MMFFGFGGRRRPAYHGGGGSRFEHTYRCYPASSAARPHLETGDKVLLPASALHRLASLRI
DYPMQFELRGCSNANAASGDANDATGGATAAAQASDPRTSHCGVLEFVADEGTVVMPGWM
MENLRLRAGDAVRVRSASLPKGTYVKLRPHAAAFLDVSNLKAVLEKTLRAFSCFTTGDTI
AVAYNNRSNRVDIVEMRPATAVSIVDTDCEVDFAPPLDYREPEKPQQPTASPSEAGDDDA
VAKDDETPEFRPFTGSGKRLDGNASELQAASEAPSTIAARSAAHSDSNGRGKKQQTSSVA
PAASGASSSSARQKTGKLVFGSRPRLDA
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgatgttcttcggtttcgggggacgacgacgacccgcttaccatggcggcggcggcagc
aggttcgagcacacctaccgctgctacccggcgtcctccgccgccaggccgcacctggag
accggcgacaaggtgctcctgccggcgtccgcgctccaccgcctggcgtccctccgcatc
gactaccccatgcaattcgagctccgcggctgcagcaacgccaacgccgccagcggcgac
gccaacgacgccaccggcggcgcgacggccgccgcccaagcatccgacccgcggacctcg
cattgcggcgtgctggagttcgtcgccgacgaaggcacggtggtgatgccggggtggatg
atggagaacctgcggctgcgggcgggcgacgccgtccgcgtgcggagcgcgtcgctcccc
aagggcacctacgtcaagctgcggccgcacgcggccgccttcctggacgtctccaacctc
aaggccgtcctggagaagacgctgcgggccttctcgtgcttcaccacgggggacaccatc
gcggtcgcctacaacaaccggagcaaccgcgtcgacatcgtcgagatgaggccggcgacg
gcggtcagcatcgtcgacacggactgcgaggtggacttcgcgccgccgcttgactacagg
gagcccgagaaaccgcagcaacctacggcttcaccttctgaagctggagacgacgatgct
gtggctaaagatgatgagactccagagttcagaccgtttactggttccgggaaaagattg
gatggtaacgcctcggagctacaagcagcgtcggaggctccttccaccattgcagcacgc
tctgcagcgcattcagattcaaacggaagaggaaaaaagcagcaaacgtcgtctgtggca
ccggcagcttctggagcgagcagctcatccgctcgtcagaaaacagggaagcttgtgttc
ggttcgaggcctcgtttggatgcgtag
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integrated database retrieval system
