Panicum virgatum (switchgrass): 120710586
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Entry
120710586 CDS
T07260
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 homolog
KO
K28108
shortage in chiasmata 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120710586
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Meiosis-specific proteins
Others
120710586
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Other DBs
NCBI-GeneID:
120710586
NCBI-ProteinID:
XP_039852164
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Position
1K:complement(43554299..43566108)
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AA seq
1725 aa
AA seq
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MRTRFLAADYVAPSPSPSAAAASDRALALASLPFPSLPVPTLPPEPHLPDPPPFPADFLP
VASVGGDDLDSLPTASALSEFLASVIPHPLPVPDISAADEGLDDYLYDRGVYGKGYSSTD
PVAFKISKGLDEMSREKGEKEEGSSLETSALKKRRELLKELRFEVVEVDLLPVLQRKIAS
FDDEEPDGGAIFSFGVPDVKIHLDFIDIDTEKTIEYPAEVAESIYRVEKIPVKHDDDEDC
PYARDGYCLEIAGLEHGLIVPQLEISRNSWELDECPAKPVISDIFHSIAENLNDGAQVHL
PSFDSTEFLRSRDMDMLAFVCEDAPHVEYQVDKPITAKDVAEMDLVRINDNILLEKKSAF
YPLKPDGTCSDLPCFRLFEEVEIIDFPSDDAFKMLVQSEKAEMNTSDEIFKDDFDQARRF
YESVVSSELALVDDTFKSLPTPILNDDKAVRSMLPPIEEVLCSLKPLPLSAADGIYLDWH
LLLEGPCSRESCSTHASMLEEVKPCTLSSELQISCQQTPAFGIDFLEDFQRSAKLQHEDK
QNEIYVPEPISHDPSAKLEAAQKYKKESDVTGRSHMERPSEKASSLLESMPQSNELNYYL
NGKNGTNKLWNNENVFTSDIPPSKQQAVPFSTRAKVDKLIEIHPVRLSDLIRGLIKDIHV
NYTSALQESTYFRHSFSDGQGLNISKQKLLELITGEGSEDLYKHCKNEDKMDLIVLYALM
QVAYYLCFFGLHAAYLYIGNLTVSFESIPEGLRNIQCCIGEALLKAEKQLFESHPSLSDI
ETIIRSNTQIGQKILIVSDRAFWLPLGRKLTAMKMTSVEVGTATYSDPVIKANSKAWMLE
ELWKSDCILLDNKNIPASFPFSEFCMILEYGGPNKSSTLLALAPKLDDLPPLHFLYVTLN
GEDFPVALVEDNHTDKDLKSTLDDVVHTLQKDLQEKMNKMRIFDSLNYIPTTNQQEHLQE
KLSIHLAADPSEKIPVDGQLQNQGILDEKNIVDSHSFVPPAEQLNTLNQITFADSQKFVP
AVGKSSSTSSVSANVLKNPQDNQSASASDFPLSVKIDSTKLGRLSAPEVVIVVNTGNHGK
HMLFSRRSSYQQILALEKEGMQVVERDVDLPVDLILSPSVCLLWYDTRIFGSSELTISAD
TSTITNFIQDISANILMSISFCFSGCIMVFEVENHLLPSVMEASDSLYASAAGLDMNLQL
FFSPMPKSTDQIILNCARNVVRKNQAPPDIPESESLAESFLTAFPSIIPLSAHMILSSGS
LVDFLGWSHEQRTQAVEKYCLPPQNIYLFSALCKFGELGESRSVMTECSSVDSDISSALL
QSTRKKKKRVVDFSVAINDPACPNPRDQLCGDYEHDKVFSPSMLRKFSHIEDTVPELPEV
FIVDQNLNMGRKGVSYKPRKHDVDTVARNQMIDDDFITELSPNFRTYNERTSSMVDTYNF
SGQPELGAKQTIRSSFPSSRPSFCRASSHPTFPSAMEINNDPCDWDVSCGANKKWAGHLH
GDFATSSHRNNLASRYQEPRQETMQSPANSLSFLKQNFGDYGASQSSGWEMDYLRQMNEN
RIARQERSRCNASSAMSNSRMRDSSHGILSAPPIESFIYQRSTDAPLRDQNPSNTESFRY
RRNINTPVRNQSPTIGAHRHGKGRAETKAQSHSIRMDFKAQPSTNHEKTIVPSIEPTWTP
LDKRARQKLSFATYGKEKQSKLVWRHQNSPGVGCGFRKRYREEGT
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atgcggacccgcttcctcgccgccgattacgtcgcgccgtcgccgtcgccgtcggcggcc
gccgcctccgaccgtgccctagccctagcgtccctacccttcccttcccttcccgtcccg
actcttcctcccgagcctcacctccccgacccgccccccttccccgccgatttcctcccc
gtcgcgagcgtcggtggggatgatctcgactcgctccccaccgcttccgcgctctccgag
ttcctcgcctccgtcattccgcatcccctacccgtgccggatatctccgccgccgacgag
ggcttggatgattatctctacgataggggtgtgtatggcaagggttatagctcgacggat
cctgttgctttcaaaatttccaagggattggacgagatgagccgagagaagggtgagaag
gaagagggatccagtttggagacctccgcacttaagaagcgacgggagctgttgaaggag
ctcaggtttgaggttgtagaggtcgatctcctgccggttttgcagagaaaaattgcatcg
tttgatgatgaagagccagatggtggtgccatcttttcgtttggtgtcccagatgtgaaa
atccatctggatttcattgatattgacactgagaaaacaatagaatatccagctgaagtt
gcagagtcaatttatcgagtagaaaaaatccctgtgaaacatgacgatgatgaggactgt
ccttatgcaagagatggatactgcttggaaatcgcgggtctagagcatggcttaatagta
cctcaattggagattagtaggaattcttgggagcttgatgagtgcccagcaaagccagtg
atatccgatatttttcatagtattgctgaaaacttaaatgatggagcacaagttcatctt
ccatcatttgactcaactgagttcttgagatcacgtgatatggacatgttggcctttgtt
tgcgaagatgccccacatgtggagtatcaagtggataaaccaattacagcaaaggatgta
gcagaaatggatcttgtgaggatcaatgataatatattactcgagaaaaagtcagcattc
taccctctaaaacctgatggcacctgttcagacctgccttgcttcaggctcttcgaggaa
gtagagataatcgactttccttccgatgatgccttcaagatgcttgttcagtcagagaag
gctgagatgaatacatctgatgaaatattcaaagatgactttgatcaagcaaggcgtttc
tatgaatcggtggttagctctgagttggctttagttgatgatacattcaaatcactacct
actcctattttgaatgatgacaaagcagtgagatctatgctcccccctatagaagaagta
ctatgctccctgaaaccacttcctctatctgcagcagatggaatttatttggattggcat
cttctattggaagggccatgcagccgggagagctgctctactcatgcgagcatgcttgag
gaggtaaaaccttgcactttaagttctgagctgcaaattagttgtcagcagacaccagct
tttggcattgattttctggaggattttcagagaagtgcaaagcttcaacatgaggacaag
cagaatgagatttatgttcctgaacctatatctcatgatccttcagctaagttggaagca
gctcagaagtataaaaaagaaagtgatgttacaggtcgtagccatatggagagaccttca
gaaaaggcatcgtccttgcttgagtcaatgccacaatccaatgagctaaactactacttg
aatggcaagaatggaaccaataaactatggaataatgaaaatgtttttacttcagacatc
cccccttcaaaacaacaagcagttccgttttcaaccagagcaaaagttgacaaactcata
gaaattcatcctgtcaggctctcagatcttatccgaggccttatcaaagacatccatgta
aattatacatctgctttgcaagaaagtacatatttcagacattctttctcagatgggcaa
ggtttaaacatttcaaagcaaaaacttcttgaactgataactggagaaggttcagaagat
ttgtacaagcactgtaaaaatgaagataaaatggaccttatcgtactgtatgcattgatg
caggttgcatattacctttgcttctttggtctgcatgctgcctatctgtatataggcaat
ttgactgtaagctttgaaagtattcctgaggggttaagaaatattcaatgctgcattggt
gaagcacttttgaaagctgagaagcaattgtttgagtctcatccatcattgtctgacatt
gagacaatcattagatctaatactcagatcggccaaaagattcttatagtttctgataga
gctttctggttgccattgggtcgaaagctaactgccatgaagatgacatctgttgaggtt
ggaactgcaacttactcagatccagtgatcaaggcaaactctaaagcttggatgctagag
gaattatggaaatcagactgcattctgctagataacaagaacattccagcttcattccct
ttcagtgagttttgcatgatattggaatatggaggcccaaataaatcatctaccttgtta
gcgctggctcccaaattagatgatttgccaccactgcatttcctgtatgtcacactcaat
ggtgaagactttccagttgctcttgtcgaggacaatcacacagacaaggatctgaaatcc
acattggatgatgttgtgcatacacttcagaaagacttgcaggaaaagatgaacaaaatg
cgtatttttgattcattaaactatataccaacaacaaaccaacaggaacatctgcaggaa
aagctgagcattcacctcgctgctgatccatcagaaaaaatccctgtggatggtcaacta
cagaatcagggaattttggatgaaaagaatattgttgattcgcatagctttgtgcctcca
gctgaacagctcaataccttgaaccaaattaccttcgccgattcacaaaaatttgtgcct
gcagttgggaagagtagctccacttcttctgtatctgccaatgtgctaaaaaacccccaa
gacaaccaatcagcatcagctagtgacttccctctcagtgtgaaaattgacagcaccaag
ttaggaagattgtctgccccagaggtagtgattgttgtaaatactggaaatcatggaaag
catatgctgttctctcgaagatcatcttatcagcagatactagctttggagaaagaagga
atgcaggttgtagagcgagatgttgatctgcctgtggacctaatacttagcccttcagtt
tgtttactatggtatgataccagaatctttgggtccagcgaattaacaatatcagcggac
acatccactataacaaattttatacaagacatttctgccaacattctgatgtcaattagc
ttctgtttcagtggctgcataatggtcttcgaggttgaaaaccacctccttccttctgta
atggaggcatctgattctctatatgcttcagctgctggcttggacatgaatttgcagcta
tttttctcaccaatgcccaaatcaacagatcaaatcattctcaattgtgccaggaatgtt
gttaggaaaaatcaagctcctccagatatacctgaatcagaaagtttggccgaatcattt
ctcacagcattcccttcaattattcctctgtctgcacacatgatactttcttctggtagt
cttgtggatttcctcggatggtcacatgagcaacgcactcaggctgttgaaaagtattgt
ttgccaccacagaacatctatctcttcagtgctttgtgcaaatttggtgagctaggtgaa
tcaaggtctgtaatgactgaatgctcttctgtagattcagatatcagcagtgcattgtta
cagtccacaagaaaaaagaaaaagcgtgttgtggacttttcagtagcaatcaacgatcct
gcctgccctaatcctcgtgatcaattgtgtggtgattatgaacatgacaaggtgttttca
ccatctatgttaaggaaattctcacacatagaggatacagtgcctgagctcccagaagtc
tttattgttgatcaaaatttgaatatggggaggaaaggtgtctcttataagccaagaaaa
catgacgtggacacagttgctaggaatcagatgatagatgatgacttcatcaccgagttg
tctccgaatttcagaacttacaatgaaaggactagcagtatggtggacacatacaatttc
tctgggcaacccgaattgggagctaagcagacaatcagaagttcctttcccagcagcaga
ccatcattctgcagagcttccagccatccaacatttccatcagcaatggagatcaataac
gacccttgtgattgggatgtttcctgcggtgcaaataaaaaatgggcaggtcatttgcat
ggggatttcgccacaagctctcacagaaacaatcttgccagcaggtatcaggaaccaaga
caggaaacaatgcagagtccagcaaattctctttcttttctgaaacagaatttcggtgat
tacggagcttcacaaagctcaggttgggaaatggattatctaaggcaaatgaatgaaaat
agaatagcacgccaggagcgatctagatgcaatgcttcatcagcaatgtcaaattcaaga
atgagagatagctcacatggaattctgagtgctcctccaattgaatctttcatttatcaa
agaagtacagacgctcctttgagggaccagaacccttcaaatactgaatctttcagatat
cgaagaaatataaacactcctgtgaggaatcagagccctacaattggggctcacaggcat
gggaaaggcagagcagaaactaaagcacagagccatagcataagaatggatttcaaggcg
cagccaagtacaaatcatgaaaagaccatagtgccgtccatcgagcctacatggactcct
cttgacaagcgagcgagacagaaactttcatttgcaacgtacgggaaggagaaacaaagc
aagctggtctggagacatcaaaacagccctggtgtcggatgtggcttcaggaaaagatac
cgggaagaaggtacgtag
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