KEGG   Panicum virgatum (switchgrass): 120710613
Entry
120710613         CDS       T07260                                 
Name
(RefSeq) exopolygalacturonase-like
  KO
K01213  galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir00040  Pentose and glucuronate interconversions
pvir01100  Metabolic pathways
Module
pvir_M00081  Pectin degradation
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00040 Pentose and glucuronate interconversions
    120710613
Enzymes [BR:pvir01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.1  Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
    3.2.1.67  galacturonan 1,4-alpha-galacturonidase
     120710613
SSDB
Motif
Pfam: Glyco_hydro_28 Pect-lyase_RHGA_epim Beta_helix NosD
Other DBs
NCBI-GeneID: 120710613
NCBI-ProteinID: XP_039852181
LinkDB
Position
5K:complement(28758982..28760427)
AA seq 408 aa
MASANNALRVFFILTVVCAARAAPAPGGGAKATGGAGESFDITKLGAKSDGKTDSTKALQ
DAWTSACRATGSATVLIPKGDYLVGPLNFSGPCKAAITIQLDGTLLGSNDLAKYKSSWIE
VSHVENIVISGAGTLDGQGTTVYPKGKTPMDYKALPNTLVLFYVTNATVSGIRLLNAKFF
HINIDTSKDITVKDVSITAPADVENTDGVHVGASSKVTISNATIGTGDDCVSIGPGTSGV
TVTGIKCGPGQGISVGCLGRYKDEKDVTDVTVKDCVLKGTTNGVRIKSYEDAESVLTASH
LTFENIRMEDVANPIIIDQYYCPDKVCPGKRSNASHVSVKDVTFRNITGTSSTPEAISLL
CSDAQPCSGVQLVDVNVEYAGKNNKTMAVCSNAKGTAKGSLEALACLV
NT seq 1227 nt   +upstreamnt  +downstreamnt
atggcttccgcaaacaatgctctcagggtgttcttcatcctgacggtcgtatgcgcagcg
agggcagcccctgcgccgggaggcggcgccaaggcgaccggtggagccggcgagtccttc
gacatcaccaagctcggcgccaagagcgacggcaagacagactccacaaaggcgctgcag
gacgcgtggacgtccgcgtgccgggcgaccgggagcgcgacggtgctcatccccaagggc
gattacctggtcgggcccctaaacttcagcgggccgtgcaaggccgccatcaccatccag
ctcgacggcaccctgctgggctccaatgacctggccaagtacaagtcgagctggatcgag
gtgtcgcacgtcgagaacatcgtcatctctggggcgggcaccctggacggccagggcacc
accgtgtatcccaagggcaagacaccaatggactacaaggcgctgcccaatacactggtg
ctgttctacgtgaccaacgccaccgtctccggcatcaggctactcaacgccaagttcttc
cacatcaacatcgacacgtccaaggacatcaccgtgaaggacgtgagcatcaccgcgccc
gcggacgtcgagaacacggacggcgtccacgtcggagcctcctccaaggtgaccatcagc
aacgcgaccatcggcaccggcgacgactgcgtctccatcggccccgggacctcgggcgtg
acggtgaccggcatcaaatgcggccccgggcagggcatcagcgtcggctgcctcggccgc
tacaaggacgagaaggacgtgaccgacgtcactgtgaaggactgcgtgctcaagggcacc
accaacggcgtgcgcatcaagtcgtatgaggacgcggagtcggtgctgacggcgtcgcac
ctcaccttcgagaacatcaggatggaggatgtggccaaccccatcatcatcgaccagtac
tactgccccgacaaggtgtgccccggcaagcgcagcaacgcctcccacgtctccgtcaag
gacgtcacgttccgcaacatcaccggcacctcgtccacgcccgaggccatcagcctgctc
tgctcggacgcgcagccgtgcagcggcgtccagctcgtcgacgtcaatgtcgagtacgcc
ggcaagaacaacaagaccatggcggtgtgcagcaacgccaagggcaccgccaagggcagc
ctcgaggccctggcttgcctcgtctaa

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