Panicum virgatum (switchgrass): 120710621
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Entry
120710621 CDS
T07260
Name
(RefSeq) protein YABBY 4-like
KO
K25796
plant-specific transcription factor YABBY family protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120710621
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Yabby
120710621
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
YABBY
YABBY_N
HMG_box_2
Ccdc124
HMG_box
Zn_ribbon_Com
Motif
Other DBs
NCBI-GeneID:
120710621
NCBI-ProteinID:
XP_039852189
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All DBs
Position
1K:complement(43588230..43591812)
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AA seq
264 aa
AA seq
DB search
MMSSSSSSSAAFPLDHLAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANL
LSVNLRGLLLPPAAPPANQLSFGGGGGGGGGGGHSLLSPISPHGLLDEFALQAPSLLMDQ
ASANLSNTMSGRSNSSSCASNLPAAPMPAAKPPVLQEPEITKSAPSVNRPPEKRQRVPSA
YNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKTFKTQDAAED
MLLKDGLYAAAAAAAAANMGITPF
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgtcctcgtcctcgtcgtcggccgccttcccgctggaccacctcgcgccgtcc
cccaccgagcagctctgctacgtgcactgcaactgctgcgacaccatcctcgccgtcggc
gtgccctgcagcagcttgttcaagacggtgacggtgcgctgcggccactgcgccaacctg
ctctccgtcaacctccgcggcctcctgctaccgcccgcggcgccgccggccaaccagctc
agcttcggcggcggcggcggcggcggcggcggcggcggccactccttgctctcccccata
tccccgcatggcctcttggacgagttcgcgctccaggcgccgagcctcctgatggatcag
gcgagcgccaacctgagcaacaccatgagtggccgcagcaacagcagcagctgcgccagc
aacctgcccgccgcgccgatgccggcagcgaagccacccgtgctgcaggagcccgagata
accaagagcgccccctcggtgaacaggcctccggagaagcggcagagagtcccgtcggcg
tacaaccgcttcatcaaggacgagatccagcgcatcaaggccggcaacccggacatcacc
caccgggaggcgttcagcgcagccgcaaagaattgggcacatttcccgcacatccatttc
ggcctcatgccggaccagggcctcaagaagaccttcaagactcaggatgccgctgaagac
atgcttctcaaggatggcctctatgcagcagcggcagcggcagcagccgccaacatgggc
atcaccccattctag
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