Panicum virgatum (switchgrass): 120710686
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Entry
120710686 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT2-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120710686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120710686
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120710686
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120710686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_2
Zn_ribbon_6
zf-RING_6
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
120710686
NCBI-ProteinID:
XP_039852248
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All DBs
Position
1K:complement(2458002..2461538)
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AA seq
310 aa
AA seq
DB search
MAPGSSIVTVVPESDCGDDGLSEALGGIRLDVDSTSKPWSTSLASVALSSLAGLNDLLEC
PVCTNSMRPPILQCPNGHTICSSCKHRVDNHCPTCRQELGNIRCLALEKVAEQLQLPCKY
QSVGCTEIHPYKNKLKHEELCRFRPYNCPYAGSECPITGDVPFLVSHLINDHKVDLHEGC
TFNHRYVKPNPYEVENATWMLTVFKCFGQHFCLHFEAFLLGMAPVYMAFLRFMGEESEAQ
GFGYSLEVGGGGRKLTWQGTPRSIRDSHRKVRDSFDGLIIHRNMALFFSGGSRQELKLRV
TGRIWREQVQ
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgggaagcagcattgtgactgtagttcccgagtcagactgtggagatgatggc
ctttctgaggcacttgggggtattaggcttgatgtagactctacaagtaaaccatggtct
acgtcactagccagtgttgcattatcatcattggctggcttgaatgatttgctcgaatgc
ccagtgtgtacaaactcaatgcgtccacctatactgcagtgcccaaatggccacacaatt
tgctccagctgcaagcatagggtagacaaccactgcccaacttgccgccaagaactggga
aacatcagatgtttggctcttgagaaggtggcagaacaacttcagcttccatgcaaatac
caaagcgtgggatgcaccgagattcacccatacaagaacaaactcaagcatgaggagctc
tgcaggttcaggccatacaactgtccatacgcaggttcagagtgtccgatcacaggtgat
gttccgtttctggtgtctcatctcatcaatgaccataaggtggacctgcatgagggatgc
acgtttaaccaccggtatgtgaagcccaacccttacgaagtggaaaatgctacatggatg
ctcacagtcttcaagtgtttcgggcagcatttctgcctgcactttgaggcattcctgctt
gggatggcgccagtgtacatggcgttcctgcggttcatgggcgaggagagcgaggcacag
ggctttgggtacagcctggaggtgggcgggggcggacggaagctgacatggcagggcact
ccgaggagcatcagggacagccaccggaaggtgcgggacagcttcgacgggctgatcatc
caccggaacatggcgctcttcttctctggcggcagcaggcaggagctcaagctgcgggtc
acaggccgcatctggagagagcaagtgcaatga
DBGET
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