Panicum virgatum (switchgrass): 120710807
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Entry
120710807 CDS
T07260
Name
(RefSeq) autophagy-related protein 13a-like isoform X1
KO
K08331
autophagy-related protein 13
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
120710807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120710807
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120710807
Membrane trafficking [BR:
pvir04131
]
Autophagy
Autophagosome formation proteins
ULK complex
120710807
Atg1 complex
120710807
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
120710807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Lipoprotein_7
Motif
Other DBs
NCBI-GeneID:
120710807
NCBI-ProteinID:
XP_039852316
LinkDB
All DBs
Position
1K:complement(43712929..43722923)
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AA seq
548 aa
AA seq
DB search
MASLSDSAGAGGGGGGRAGAELMVPQFLHKALHAILAVRSPRPHASAPAPPPAAAAFRRR
DRWFHLPLHAPPPPPAAENLPEPTPGEPLVVDVYLAPSSGDGGGGGAEEVVVERWTVACE
PWPSAAAAAAVGEGLAVNRAYKRCITLLRSLYAALRFLPAYRAFRTLCASSGQVYNYEMG
HRVGSFAAPFTRAEETAMRTNRFAPVETQLGRLFISVQYRHTLAAFKLEVTSLAPAAIIM
DYVGSPAAEPMRAFPASLTEHAGSAFPQPSRRPNSWASPAPWPHTPGHQAKFSPPPTHYA
SPTPSPPTFGYLHSRFSGETAPISIPQAGGGRGPVHHRNMSEPTRAFMFPPPSPKSVRGE
AGMQESPTEANRSFKRVDGIRMGDLYANLPSGSKIRDSRDESGSGRFSGVFSSSGSPRLG
FSRSSSRLSMQDDTDDADFPFAVDDVDPDSRPGSGGKDAGDQAGSSSHKSQDAAVGYLVH
LLKSARPLRDSSYSTHTSRAESIEAESTSSVMSRKTSDALEELESFREIKENLLARSRSR
LQDSLDKP
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcctgtcggattcggcgggcgcaggcggcggcggcgggggccgcgcgggcgcg
gagctgatggtgccgcagttcctgcacaaggcgttgcacgccatcctcgcggtgcggtcg
ccgcgcccgcacgcgtcggcgcccgcgccgcccccggcggcggcggcgttccggaggcgg
gaccggtggttccacctgccgctccacgcgccgccgccgccgcccgcggctgagaacctg
ccggagccgacccccggggagccgctcgtcgtggacgtgtacctggccccgtcgtcgggc
gacggcggcggcgggggggcggaggaggtggtggtggagcggtggaccgtggcgtgcgag
ccctggccctcggccgccgcggcggcggcggtgggggagggcctcgcggtcaaccgggcg
tacaagcgctgcatcacgctgctgcggtcgctctacgccgcgctccgcttcctcccggcg
taccgcgccttccgcacgctctgcgcgtcctccggccaggtctacaactacgagatgggc
caccgcgtcggctccttcgccgcgcccttcacccgcgccgaggagacggccatgcgcacc
aatcgcttcgcccccgtcgagacccagctcggccgcctcttcatctccgtccagtaccgc
cacaccctcgccgccttcaagctcgaggtcacctccctcgcgcccgccgcgatcatcatg
gattatgtcggcagcccggcggccgagcctatgcgcgccttcccggcctcgcttacggag
cacgccggctcggccttcccgcagccctcgcggcgccccaacagctgggcgtcgcctgcg
ccctggccgcacacgccggggcaccaggcgaaattctcgccgccgccgacgcattacgcg
tcccccacgccctcgccgcccacgtttggatacctgcactcgcggtttagcggcgagact
gcgccaataagcataccgcaggcgggcggtggcaggggccctgtgcaccatcggaacatg
tcggaacccactcgagccttcatgtttcctccaccttcgcccaagagtgtgcggggggag
gcagggatgcaggagtcccccaccgaggccaatcggtcgttcaagagggtggatggcatc
cggatgggcgatctctatgctaacttgccgtctggttctaagattagagacagtagggat
gaatctggcagtggcaggttctctggtgtcttctcttctagtggttcaccacgactcggg
ttctcgagaagttcaagcagattgtctatgcaggatgatactgatgatgctgattttcct
tttgctgtggatgatgttgatccagattcccggccaggtagtggtgggaaggacgcaggt
gatcaggcaggttcctcgtcccataaatcacaagacgctgctgtcggttatcttgtccac
ctgctgaagtctgcacgtccactgcgagattctagctactcaactcatacatcaagagct
gaatctattgaagcagaaagcacaagttccgtcatgtcccgcaagacatctgatgcgctc
gaggaacttgaatctttcagagaaataaaggagaacctgctagcacggagtagatctagg
ctccaggattcattggataaaccctag
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