Panicum virgatum (switchgrass): 120711045
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Entry
120711045 CDS
T07260
Name
(RefSeq) single-strand DNA endonuclease 1-like isoform X1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120711045
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120711045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Chromo_SEND1
XPG_I
XPG_N
Chromo
Motif
Other DBs
NCBI-GeneID:
120711045
NCBI-ProteinID:
XP_039852364
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Position
6K:9984..14610
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AA seq
732 aa
AA seq
DB search
MGVKNLWDILDSCKKNLPLQHLQNKKVCVDLSCWLVQLCSAHRSPAFLKDKVYLKNLFHR
IRALLALNCSLVFVTDGAIPSVKLATYRRRLGVNAAAALFLFPSVSPQPQSFNFSFGINS
PQAAREEDNSQPLTSLRRNKSSEFSRMIKEAKHLGMALGIPCLDGVEEAEAQCALLNFAS
LCDGCFTSDSDSFLFGARTVYRDVFIGEGGYVICYEMEDIEKKLGFGRNSLISLAVLLGS
DYSNGVLGFGPEAACRLVKSVGDDAILDQILSNGVKPTRKSKAKNSGVNVERVGGTCPKA
STCKLGMSQDSGGEFRDIINAYLEPKCHLLDSEAVQRACSQRPYLRLQLQQICEQYFEWS
PEKTDEYILPKIAERELRRFSYLRSTSSDLGIKPSLNEMPVPCPVLAIVKQRKVHGNEHY
EVSWRNIDGLQVSVVPGDLVRSACPEKIAEFLEKKDEQKKQKRRARPKKSAPAAVKEVDA
QLQELLLGIESESGTLPCTAVGPQKADIHTVAPLQDIVDLSSPSPPIRACKIARSRKFSE
SAAGPMDGIDLQSQSLLPGTMDSKENALLCDMQNSTQDNDVIDLFSPFPRAAHKPHATRG
LQLCMEEGRRALSDISNFPEKGNTLGALGYKLECGARGNDVHLEEASSSISRGIEVAGKA
DDCSWRSNAEDNVVAEVATIDLSSPLPVIGNKSKKNVDVIDICEAGSVRSPEHERKAREL
RSFLASIRNELY
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcaagaacctctgggacatcctcgactcctgcaagaagaatctcccgctccag
cacctccagaacaagaaggtgtgcgtggatctttcctgctggctcgtgcagctctgcagc
gcccaccgctccccagccttcctcaaggacaaggtctacctcaagaacctcttccaccgc
atccgagccctcctcgccctcaattgcagcctcgtcttcgtcacagatggggcgattccg
tctgtcaaattggcaacttacaggcgccgcctcggagttaatgctgctgctgctttgttc
ttgttcccctcagtttcccctcaaccccagtcatttaatttctcctttggaatcaattca
ccccaggctgctcgagaggaggacaactcacaacccctgacttctttgcgccggaacaag
agctctgaattctcgcgcatgataaaagaggccaagcatcttgggatggccctgggaatc
ccctgcttggatggagtggaagaagcggaagcacagtgcgcattgctcaattttgcctcc
ttgtgcgatggctgttttacatcagattcagattcattccttttcggtgcaaggacagtt
tatagagatgttttcataggagagggtggctatgtaatttgctatgagatggaagacatt
gagaaaaagcttggttttggcaggaactcactgatatctcttgcagtacttcttggtagt
gactattctaatggagttctaggcttcggcccggaagcagcatgccggcttgttaaatcc
gtaggggatgatgccattcttgatcagattttgtccaatggagtaaagcctacaagaaaa
tctaaagcaaaaaatagtggcgttaatgttgagagggttggtggcacatgcccaaaagca
agtacctgcaagcttgggatgagccaagattctggtggtgaatttcgtgatataataaat
gcatatctggagccaaaatgtcatttacttgattcagaagctgtgcaaagggcatgcagc
cagcgtccataccttcggttacaactgcaacagatatgtgagcagtactttgaatggagc
cctgagaagactgatgaatatatacttccaaagatagctgagagggagctcagaagattt
tcatatcttcgctccacgtcttcagatttaggaattaaaccttcactaaatgagatgcca
gtaccatgccctgtattggcaattgtgaagcagcgaaaagttcatggaaatgaacattat
gaggtttcatggagaaacatagatgggctccaggtttcagttgttccaggggatcttgtt
agaagtgcttgcccagaaaaaatagctgaatttttggaaaagaaggatgagcagaagaag
caaaagaggagagctaggccaaagaaatcagctccagctgccgttaaagaggtggatgcg
cagctccaagaattgttgcttggaattgaatctgaaagtggtacccttccatgtacagcg
gttggccctcaaaaagcagatatacatactgtggcaccgctccaggatattgttgacctg
tcttctccatccccacctatacgagcttgtaagattgcaaggtccagaaagttcagtgaa
tcagctgcaggacccatggatgggattgatctgcagagccaaagtctgctacctggaaca
atggactcaaaagaaaatgcccttttgtgtgacatgcagaattcaacacaggataatgac
gtgattgatttattttcaccctttcctcgagctgctcataaaccccacgccactcgaggc
ttgcaactctgtatggaagaaggaagaagagccctctcagatataagcaattttcctgag
aaagggaacacactgggcgctctaggttacaagcttgaatgtggagcaagaggcaacgat
gtgcatctggaagaagcatcatcctcaatcagccgtggcatcgaagtggcaggcaaagct
gatgattgttcctggagaagcaatgctgaggacaatgtagtagcagaagttgcgaccatc
gatctgtcctcccctttgccagttatagggaataaaagcaagaaaaatgttgatgtaata
gacatttgtgaagcaggtagtgttaggtctcctgaacatgagaggaaagccagagagctc
aggtcgtttctagccagtataagaaacgagttgtattga
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