Panicum virgatum (switchgrass): 120711055
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Entry
120711055 CDS
T07260
Name
(RefSeq) basic salivary proline-rich protein 4-like isoform X1
KO
K13210
far upstream element-binding protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120711055
03041 Spliceosome [BR:
pvir03041
]
120711055
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
120711055
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120711055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_SLS1_1
Motif
Other DBs
NCBI-GeneID:
120711055
NCBI-ProteinID:
XP_039852376
LinkDB
All DBs
Position
6K:140698..151542
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AA seq
383 aa
AA seq
DB search
MEECASTTNPQKTNNNNNIAFFPKQVGARIQLIPQHPPEGVTLTERTVRVTGNKKQIEVA
KDLIKQAMNQNFSKHANQSGGYGPQGYRPQGHGEALQWGPRSQSQPGYGYPPRGMPPPQN
YNPAYGGYPQQGPPRGGMGWDQRQSPPPHPSYQGGGSDYYKQGSQPYDSQPPSYPPGPGN
YNSYGQSQAPGYGQPPYPQHAPQQNYGHGYGDPRYNAPPPNQYYGQPPMGPQQGYPQQAD
PYARPSYSGLGQWAPRGAPAADGSYQPPPASDGPPSQQPPAYGQTYGVATAPDGYAQQGY
PQQSGQAPAPYSQNAPAAPGYPQQGTQQGGYAQYPQTQPAYGDQAAQANANNCCRKPKVL
FLFYNRTPWTCAICSKGCGEKHL
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatgtgccagcacaaccaatccgcagaaaaccaacaacaacaacaacatagcc
ttttttcccaagcaagttggtgctcgtattcagttgataccccaacatcctccagagggt
gttacattgactgaacgaactgtacgtgtaactgggaataagaaacagattgaagtcgca
aaggatctgatcaagcaagctatgaatcagaatttctcaaagcatgcgaaccaatctggt
ggatatggtccgcaaggttaccgccctcagggtcatggtgaggctttgcagtgggggcca
cgttctcaaagtcagcctggctatgggtatccaccaagaggtatgcctccacctcagaac
tacaacccagcctacggtggttacccacagcagggaccaccaagaggcggcatgggctgg
gaccaaaggcagagccctccgccccatccttcatatcagggtggtggttctgactactac
aagcagggatctcaaccatatgatagccagccaccaagctaccctcctggaccagggaac
tacaacagttatgggcaatctcaagctcctggctatggacaacctccatatccgcaacat
gcgcctcaacagaactatggccatgggtatggtgatcctagatacaatgctccgcctcca
aaccagtactatgggcagccaccaatgggcccccagcaaggctatcctcaacaggcagat
ccttatgcaaggccttcatacagtggactgggacaatgggctcccagaggtgctccggct
gcagatggctcctaccagccaccacctgcatctgatggaccaccctcccagcaacctcct
gcttatggccaaacatatggcgtggcaactgcacctgatgggtatgctcaacagggctac
ccacagcagagtgggcaagcaccagctccatatagccagaatgcaccagcagcaccaggc
tatcctcagcaaggcacacagcaaggtggctatgcacagtacccgcaaacccaaccagca
tatggtgatcaagcagctcaagccaatgcgaacaattgctgcagaaaaccgaaagtatta
tttctcttttacaatagaacaccttggacttgcgctatttgttcaaaaggttgtggagaa
aaacacctttag
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